Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30464g00003 ATGGGTGCTCCTAAGCAGAAATGGACATCAGAAGAGGAAGCAGCTCTTAAAGCTGGAGTTGTCAAGCATGGGGTTGGTAAATGGCGTACAATACTAAAGGATCCAGAATTTAGTGGTGTTTTGTATCTGCGGTCCAATGTGGATCTCAAGGATAAATGGAGAAATCTGAGTGTGATGGCAAATGGATGGAGTTCCAGGGAAAAGTCTAGATTGTCTATCAGAAGGGTGCATCAAGCCCCAAAACACGACGAGAACTCCTTGGCTACCAGTCCTCCTATTCAAAGTGATGAAGATATTTCTGATGTTAAGCCTCTTCAAGTTTCTAGTTCTAGAGATGTGGTGCCATTTTCTGGTCCAAAAAGGTCTATTGTAAGACTGGATAATCTTATAATGGAAGCAATAACTACCTTGAAGGAAACTGGTGGTTCTAATAAGACAACTATTGCAGCTTTCATAGAGGTAAAACGCAGGTATAGAATTGCACCTATTCCAGCATATTCTGACAGAAGAAGAAGCTCAAGCTTGTTGTTAACTGATGGGAGGCAGAAAGCCCCTTTGAGAGGTGACAAGGAAGAGACCAATGTCCTTACAAAGTCTCAGATAGATTTAGAATTAGCAAAGATAAGGTCTATGTCTGCACAAGAGGCAGCTGCAGTTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCTGCCATAGCAGAAGCTGAAGAGGCAGCAAGAGAGGCAGAGGCTGCAGAAGCTGATGCAGAGGCGGCACAAGCTTTTGCAGATGCTGCTATGAAAACACTGAAAGGGCGAAACACCCCTAAGATGATCCATGCTTGA 822 0.4404 MGAPKQKWTSEEEAALKAGVVKHGVGKWRTILKDPEFSGVLYLRSNVDLKDKWRNLSVMANGWSSREKSRLSIRRVHQAPKHDENSLATSPPIQSDEDISDVKPLQVSSSRDVVPFSGPKRSIVRLDNLIMEAITTLKETGGSNKTTIAAFIEVKRRYRIAPIPAYSDRRRSSSLLLTDGRQKAPLRGDKEETNVLTKSQIDLELAKIRSMSAQEAAAVAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQAFADAAMKTLKGRNTPKMIHA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30464g00003 273 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Stsc30464g00003 273 SMART sant 4 59 IPR001005 -
Stsc30464g00003 273 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Stsc30464g00003 273 PANTHER SINGLE MYB HISTONE 4 1 271 IPR044597 GO:0003691
Stsc30464g00003 273 Gene3D - 2 59 - -
Stsc30464g00003 273 FunFam Telomere repeat-binding factor 1 2 58 - -
Stsc30464g00003 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Stsc30464g00003 273 MobiDBLite consensus disorder prediction 74 106 - -
Stsc30464g00003 273 SUPERFAMILY "Winged helix" DNA-binding domain 119 158 IPR036390 -
Stsc30464g00003 273 MobiDBLite consensus disorder prediction 83 106 - -
Stsc30464g00003 273 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Stsc30464g00003 273 Coils Coil 217 254 - -
Stsc30464g00003 273 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30464g00003 Stsc-Chr30464 13936 17740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30464g00003 1 271 Single Myb Histone (SMH) Gene Family AT1G49950 59.150 3.57e-80 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc30464g00003 Myb_DNA-binding 1.6e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30464g00003 K09422 - gmx:100780698 335.109