Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30462g00008 ATGGTGAAATCAAGTTCGTGCTTCAAGCTCATCACTTGCGGTGGTGGTGCTGATTCTGCAGACGGAGACGCTTCTAATTACCAACCAGTCTCTGAGGTCAAGGATACTAATGATAAACGTGGTTGGAGTTTCCGGAAGCGATCTGCAAGGCACCGTGTGCTTAGCAACACTGTAGTAACAGAAACCCCAACTTCAGCAAACAAGGAGAGTTCGGAATGTACCAGTAAAAACTTTCAACCAGTGCCAGCTGAACCTAATGTTGTTGAGAAAATTCATACAACAAGTGTCTCTGATGAGAAGGGTCAGTTACCTTCCTTGGAAAGTTCACAAATGCCAGAAAAAATTGTCACAGAAACCAAGAATACGGTGGATGATGATCCAAATCCACCCGAATCAGCTGTTATCATAGTCCAGGCTGCCATTAGAGGGTTCTTGGCTCGAGGAGCATTGCTAAAGAGCAAGAATGTAGTGAAGTTACAAGCTGCTTTTCGAGGCCACTTGGTCAGGAGGCATGCTGTAGGAACACTTCGTTGTGTTCAAGCCATTGTTAAAATGCAACTCCTTGTCCGAGCTCGTCGTGCGCAGCAGGGTAATGTAAATCACGTGTCACACACTTCCATGGAGAAGATAGCGAGCAACAAGTTCGCCCGTCAGCTGTTGGAATCAACACCAAAAAATAAACCTATTGGTGTCAAATGTGACCCTTCAAAAAGTGATTCTGCTTGGAGATGGTTGGAGAGATGGATGTCTGTTTCAGCAGCAGATTCTGCAGATAACGTAAAACCAGTTGGCATGTCTGAACAATCAGACAAAACCAAAGAGAACACTTCTGTTTCTAAATTGGAAATGGACATTCAAACCGAAGTTGATCTTCAGTCGCCTGACTCTAGGGAATTGCCTGACTCTAGGGAATTGCCTCTGGCATCTGAGGATGAAGACAAGACAACAAATTATGATGCTACTAACTATAACTATGATGCAAACCATTCTACATCTTTCCAAACAGATGTCTTGGAAGAGGTTCCTGAAAAGACTTCTATCAATGATGATAAAGGAACAGCAACTGAAACTGGTTCTTTCCAAAATGGTAAAATGGAAACAGATGCAAGTGCTCCAGAGGAATGTGGTCCTATTGATCAGAAGCCTGAAATTGATACAGCAGACAAACAATCTACGAATCAAGTTGACCTAGACCAACTCGAGACAGAGGGAAAGAAACTTGTGCAGGGAACAAGGAAGTCCAATAATCCTGCTTTTATTGCCGTGCAGTCAAAATTTGAAGAGCTGACTTCAATGGCCAATTCAAGTAAATCAAGCAGTCTGTCCAATCAAGATGCACCGCTTGAATCACAAGCAGACACATCTTCTACTGCTGCAGTTACTGCACATAGATCGAAGGAGTTCTTCTCATCCGAGAATTCTGCAAATTATCCTTTCATAACTGTTGGATCATCTGAATGTGGTACTGAACTCTCCATTACTTCTACTCTTGATTCACCTGACAGATCTGAGGCTGGGGCTAAGGAAAGTGAGAATGATGCCAAAGATTTGGTAGAAAGGATAGATAATCCTGAAAGTAAGATTGATTGTGGTCTTGATCCCAATACAGTGCAGACTACTCCAACTAATAACGTATCAAACTCAGATTTGGGTCAATTAGAGATCACTGATGACATGAGCAACAATGTGGTTCATCCAGGTCTTGTTGGGAACTCTCAAGAGGTTGGTATTAAGCCTGAGCAAAATGCAACTGACCTATTGAGAGAACCGGAAGAGGCTATTCAGCAAGACTCCAAGTTGTCTCCGGAAGCTTCTCCAATAAGTCAGCAATATCAACTCAGAACACCATCTAGTCAGGTATCGATGTCCATTCCCGATTCTCAAGGAACACCATCAAGTCAGGTATCCATCAAACCTAAAGAGAAGAAAGCCAATAAGAGTGGATCTGGCAATAAGCGTAAAATCCTGTCTTCTGGTAACAAATCTCCTGCAAGTGCAAATCATGACTCAGACATAAGAGGTAGTAGGGAACAACAACCTAAAGATCAACCGAGTGGAAAGAGACGCAGTTCCTTCAGCTCAGCAAAATCTGATCAGGTTGAACAAGAAGCAAGAGATAACAGCAGTAACAATAGTTCTATTCCCCATTTCATGCAAGCTACTGAATCTGCTAGGGCCAAGATGAATGCAAATAACTCTCCAAGATCGAGTCCGGATGTACATGACCAAGAAATCCATCTTAAGAAGAGACATTCCTTACCCGGTGCAACTGGCAGGCAGGATTCTCCACGCATCCACCGATCACCGCAGTCAAGCACAAAGGGGAATGGTGTGCATCTTCAACATGAGAGAAAATGGCAAAGGTGA 2367 0.4322 MVKSSSCFKLITCGGGADSADGDASNYQPVSEVKDTNDKRGWSFRKRSARHRVLSNTVVTETPTSANKESSECTSKNFQPVPAEPNVVEKIHTTSVSDEKGQLPSLESSQMPEKIVTETKNTVDDDPNPPESAVIIVQAAIRGFLARGALLKSKNVVKLQAAFRGHLVRRHAVGTLRCVQAIVKMQLLVRARRAQQGNVNHVSHTSMEKIASNKFARQLLESTPKNKPIGVKCDPSKSDSAWRWLERWMSVSAADSADNVKPVGMSEQSDKTKENTSVSKLEMDIQTEVDLQSPDSRELPDSRELPLASEDEDKTTNYDATNYNYDANHSTSFQTDVLEEVPEKTSINDDKGTATETGSFQNGKMETDASAPEECGPIDQKPEIDTADKQSTNQVDLDQLETEGKKLVQGTRKSNNPAFIAVQSKFEELTSMANSSKSSSLSNQDAPLESQADTSSTAAVTAHRSKEFFSSENSANYPFITVGSSECGTELSITSTLDSPDRSEAGAKESENDAKDLVERIDNPESKIDCGLDPNTVQTTPTNNVSNSDLGQLEITDDMSNNVVHPGLVGNSQEVGIKPEQNATDLLREPEEAIQQDSKLSPEASPISQQYQLRTPSSQVSMSIPDSQGTPSSQVSIKPKEKKANKSGSGNKRKILSSGNKSPASANHDSDIRGSREQQPKDQPSGKRRSSFSSAKSDQVEQEARDNSSNNSSIPHFMQATESARAKMNANNSPRSSPDVHDQEIHLKKRHSLPGATGRQDSPRIHRSPQSSTKGNGVHLQHERKWQR 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30462g00008 788 MobiDBLite consensus disorder prediction 430 468 - -
Stsc30462g00008 788 MobiDBLite consensus disorder prediction 61 80 - -
Stsc30462g00008 788 MobiDBLite consensus disorder prediction 685 738 - -
Stsc30462g00008 788 MobiDBLite consensus disorder prediction 592 788 - -
Stsc30462g00008 788 MobiDBLite consensus disorder prediction 670 684 - -
Stsc30462g00008 788 MobiDBLite consensus disorder prediction 598 638 - -
Stsc30462g00008 788 ProSiteProfiles IQ motif profile. 152 181 IPR000048 GO:0005515
Stsc30462g00008 788 SMART iq_5 129 151 IPR000048 GO:0005515
Stsc30462g00008 788 SMART iq_5 152 173 IPR000048 GO:0005515
Stsc30462g00008 788 Gene3D - 130 178 - -
Stsc30462g00008 788 MobiDBLite consensus disorder prediction 258 327 - -
Stsc30462g00008 788 MobiDBLite consensus disorder prediction 502 516 - -
Stsc30462g00008 788 MobiDBLite consensus disorder prediction 739 755 - -
Stsc30462g00008 788 Pfam Protein of unknown function (DUF4005) 700 770 IPR025064 -
Stsc30462g00008 788 MobiDBLite consensus disorder prediction 763 777 - -
Stsc30462g00008 788 MobiDBLite consensus disorder prediction 351 366 - -
Stsc30462g00008 788 MobiDBLite consensus disorder prediction 650 669 - -
Stsc30462g00008 788 MobiDBLite consensus disorder prediction 343 417 - -
Stsc30462g00008 788 MobiDBLite consensus disorder prediction 491 516 - -
Stsc30462g00008 788 ProSiteProfiles IQ motif profile. 131 158 IPR000048 GO:0005515
Stsc30462g00008 788 MobiDBLite consensus disorder prediction 294 317 - -
Stsc30462g00008 788 Pfam IQ calmodulin-binding motif 132 147 IPR000048 GO:0005515
Stsc30462g00008 788 Pfam IQ calmodulin-binding motif 154 171 IPR000048 GO:0005515
Stsc30462g00008 788 PANTHER IQ-DOMAIN 5-RELATED 37 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30462g00008 Stsc-Chr30462 47218 52531 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30462g00008 412 788 IQD Protein Family AT1G19870 35.825 1.95e-40 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30462g00008 - - aip:107645297 1296.95