Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30462g00004 ATGGATGATGCTGGCCATCGTGAAAATGGAAGGCACAAAGCAGATCAATATAAATCTAGCCAGGGACAGTGGCTGATGCAACATCAGCCTTCTATGAAGCAAATTATGGCTCTTATGGCTGAAAGAGATGCACTCATTCAAGAAAGAAACCTGGCTCTTTCTGAGAAGAAGGCGGCACTTGCAGAGCGCGACATGGCATTCCTGCAGCGGGATGCTGCAATCACAGAACGAAATAATGCTTTAATTGAACGAGACAATGCAATTGCTGCCCTTCAATATCGAGAAAATTCCCTAACCAACAGTGGTGTGTCCTCATGCCCTCCAGGATGCCAAATCTCAAGGGGTATAAAACACATGCATCATCCACAGCAACAAGTGCACCATGTGCCTACTAATATGGGTGATGGTTCTTACACCCCAAGGGAAATGCACACAAGTGATTCCATCCAAACCGTGCCCATTCCTGCAGAGACCGGGAAGTCCCGGCGAGGCAAACGACCGAAGGAACCTAAGTCAGTTTCACCAAATAAGAAGGCTTCAAAAGGTACTAGAAAGGTGAAGAGGGAGGACGAAGATCCTCATAAGATGATGTTTGGCAAGGCTAATGAATGGAAGAGTAGTCAGGAAATGATTAATGGGGGTGAAGACCTTAACAAGCAGTTAGAGGTGTCAAAGGCCGATTGGAAATCCCAGGACTTGGCATTGAACCAAGTTGCATACGACGAGTCGACAATGCCAGCTCCAGGGTGTTCTTGTACTGGTGTCCTGAGGCAGTGTTACAAATGGGGGAATGGCGGTTGGCAATCTGCTTGTTGCACAACCACCCTTTCAGTGTATCCCCTTCCAGCAGTTCCAAACAAGAGGCATGCTCGGATAGGTGGTCGGAAAATGAGTGGAAGTGCTTTCAACAAGCTGCTTAGCCGGCTTGCTGCGGAGGGTCACGATCTGTCGAACCCAGTTGATCTCAAGGACCATTGGGCCAAACATGGTACAAATCGGTACATCACAATAAAGTAG 1017 0.4779 MDDAGHRENGRHKADQYKSSQGQWLMQHQPSMKQIMALMAERDALIQERNLALSEKKAALAERDMAFLQRDAAITERNNALIERDNAIAALQYRENSLTNSGVSSCPPGCQISRGIKHMHHPQQQVHHVPTNMGDGSYTPREMHTSDSIQTVPIPAETGKSRRGKRPKEPKSVSPNKKASKGTRKVKREDEDPHKMMFGKANEWKSSQEMINGGEDLNKQLEVSKADWKSQDLALNQVAYDESTMPAPGCSCTGVLRQCYKWGNGGWQSACCTTTLSVYPLPAVPNKRHARIGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30462g00004 338 PANTHER - 1 338 IPR010409 -
Stsc30462g00004 338 MobiDBLite consensus disorder prediction 1 15 - -
Stsc30462g00004 338 SMART GAGA_bind_2 1 338 IPR010409 -
Stsc30462g00004 338 MobiDBLite consensus disorder prediction 125 155 - -
Stsc30462g00004 338 Coils Coil 51 78 - -
Stsc30462g00004 338 MobiDBLite consensus disorder prediction 1 23 - -
Stsc30462g00004 338 MobiDBLite consensus disorder prediction 120 196 - -
Stsc30462g00004 338 Pfam GAGA binding protein-like family 1 338 IPR010409 -
Stsc30462g00004 338 MobiDBLite consensus disorder prediction 159 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30462g00004 Stsc-Chr30462 14740 18235 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30462g00004 65 338 BBR or BPC Transcription factor family AT5G42520 62.543 1.15e-113 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Stsc30462g00004 GAGA_bind 6.8e-105 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30462g00004 - - gmx:100783502 583.178