Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30460g00003 ATGACTTGGGCAATGGAAGCTGAGAGAGAATCAGAACACCACCAAGATCACAACAATAACATCACCACCTTCATGGACGACGTTGTTAATGGCCACGACCAATATCACTACAACCATGACATTATCTCGATGATGATGATGATGAGTAGAGACATTTCTAACAATTTCTTCCCTCCTGAACCAGACAACAACGTTAGCAACAACCTCTTTCTCCATCATCATCATTCACCATCTTCAGTAGTAATGGACTCTTCTTCTTGTTCTCCTTCTCCTTCTCCTACCTCCATCTTCACCAATCTTCATAACCATGACCATCTTTCTTCTTCTTCTTCATTATCATCACACCTTCATTGCTTTCTCCCTCCACCACCACCACCAAACTCATTTGATCTTGCTCCTTTCCTTGACCCTCATCATCATCGTCAAGGCTCCATCATAACCACAACCACCACCACTACTACTACCACTGATTTTGCAGGGTTTCAGAATAACTTTGAGGAACTTGGTTCTTGTTCTTCTTCTTCTGGAAAAGCCACAGCAGCAGAACCATTGTTGATGTTCAATAACAGATCGAAGATTCTGAGACCCCTTGATGATTCTTTACCTCCTTCTGGAGCACAACCAACTCTCTTTCAGAAGAGAGCAGCACTCAGAAAAAACAACAACAACAACATCATGCCACCATCTTCATTATCCTCATCACAACAACAAGGTGGTGTGAAGAGAAAGGTAGTGATGGAGATGGAAGATATTAATGGAAGCTTTGATGGGTCATTATCGGCATTCAACTATGATTCCGGCGATGATGAATTGCTTGATACAAACAACAAGAATAATGGTGGTGGTGGTGGTGGTGGTGGAAGAGGGAGCAATAATAATAATAAAAATAATAATGGAGGAGGAGGAGGGAAGAATAAGAATAAGGGGATGCCCGCGAAGAACTTGATGGCAGAGCGGCGTCGCCGGAAGAAGCTGAATGATAGGCTCTACATGCTCAGGTCCGTTGTTCCAAAGATTAGCAAAATGGACAGGGCTTCAATATTAGGGGATGCAATTGAATATCTGAAGGAACTGCTGCAGAGGATCAATGAGCTCCACAATGAATTAGAATCATCAAACACAACATCTACTTCTGGTGGTGGGAGCAGTGGTGGTTCACTCACACCAATACTACCACCACCACCACCACCATTAGTAGCCTCATCATCAAGCTTCCATCCATTGACACCAACTCCACCATCACTTCCAACCCGCATTAAAGAAGAGATTTGCCAAACTTCCTCTCTGCCTAGTCCCAATGCTCAACCTCCTAAGGTTGAGGTGAGGTTGAGGGAAGGAAGGGCAGTGAACATCCACATGTTTTGTGGTCGGAAAGCAGGGCTTTTGCTGTCAACAATGAAGGCATTGGATTCACTTGGCTTAGACATTCAGCAAGCTGTTATCAGCTGTTTCAATGGTTTTGCTATGGACATTTTCAGAGCTGAGCAATGCAAAGAAGGTCAAGATGTGCATCCAGAGCAAATCAAGGGAGTACTCTTGGCTACAGCTGGGTACCCTGCCATCATCTAA 1569 0.4398 MTWAMEAERESEHHQDHNNNITTFMDDVVNGHDQYHYNHDIISMMMMMSRDISNNFFPPEPDNNVSNNLFLHHHHSPSSVVMDSSSCSPSPSPTSIFTNLHNHDHLSSSSSLSSHLHCFLPPPPPPNSFDLAPFLDPHHHRQGSIITTTTTTTTTTDFAGFQNNFEELGSCSSSSGKATAAEPLLMFNNRSKILRPLDDSLPPSGAQPTLFQKRAALRKNNNNNIMPPSSLSSSQQQGGVKRKVVMEMEDINGSFDGSLSAFNYDSGDDELLDTNNKNNGGGGGGGGRGSNNNNKNNNGGGGGKNKNKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINELHNELESSNTTSTSGGGSSGGSLTPILPPPPPPLVASSSSFHPLTPTPPSLPTRIKEEICQTSSLPSPNAQPPKVEVRLREGRAVNIHMFCGRKAGLLLSTMKALDSLGLDIQQAVISCFNGFAMDIFRAEQCKEGQDVHPEQIKGVLLATAGYPAII 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30460g00003 522 SMART finulus 315 364 IPR011598 GO:0046983
Stsc30460g00003 522 MobiDBLite consensus disorder prediction 220 240 - -
Stsc30460g00003 522 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 180 517 - -
Stsc30460g00003 522 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 307 373 IPR036638 GO:0046983
Stsc30460g00003 522 MobiDBLite consensus disorder prediction 370 417 - -
Stsc30460g00003 522 MobiDBLite consensus disorder prediction 370 385 - -
Stsc30460g00003 522 Coils Coil 348 375 - -
Stsc30460g00003 522 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 309 358 IPR011598 GO:0046983
Stsc30460g00003 522 MobiDBLite consensus disorder prediction 220 241 - -
Stsc30460g00003 522 CDD bHLH_AtAMS_like 312 370 - -
Stsc30460g00003 522 Pfam Helix-loop-helix DNA-binding domain 316 358 IPR011598 GO:0046983
Stsc30460g00003 522 MobiDBLite consensus disorder prediction 270 315 - -
Stsc30460g00003 522 Gene3D - 304 374 IPR036638 GO:0046983
Stsc30460g00003 522 FunFam BHLH transcription factor 305 373 - -
Stsc30460g00003 522 MobiDBLite consensus disorder prediction 273 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30460g00003 Stsc-Chr30460 44172 46949 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30460g00003 189 495 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 56.774 3.08e-94 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc30460g00003 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30460g00003 - - ahf:112772589 467.618