Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30460g00002 ATGGCATCATCGGAGGCAACAACTATGAAGGTTAATGGTAATTCTCACAACAACAACTCTTCGGAGGTGAACAACAATGTTAATACTTCATCTTCTACACCCACCTCACCCAAAGACGCGGAAGCTGCACTCTACAGGGAGCTATGGCATGCGTGTGCAGGTCCTCTTGTTACAGTTCCAAGGGAAGGAGAGAGGGTTTTCTATTTCCCTCAGGGGCACATAGAGCAGGTGGAGGCGTCAACCAATCAGGTGGCTGACCAACACATGCCTGTGTACGATCTTCCTTCCAAGATCTTATGTCGGGTCATCAACGTGCAGCTCAAGGCGGAGCCCGACACGGATGAGGTGTTTGCCCAGATAACCTTGCTTCCAGAGCAAAATCAAGAGGAGAATGCGGCTGAGAAAGAGCCTCCACTGCCACCACCTACGCGGTTCCATGTACATTCGTTCTGTAAGACGTTGACCGCATCTGATACAAGCACCCACGGTGGGTTTTCCGTTCTTAGGCGGCATGCTGACGAGTGCCTTCCTCCCCTGGATATGTCAAAGCAGCCGCCTACCCAGGAATTGGTGGCAAAAGATTTGCATGCGAATGAATGGCGATTTAGACACATATTCCGAGGTCAACCCCGGAGGCACTTGCTTCAAAGTGGTTGGAGTGTTTTTGTCAGCTCCAAGAGGCTAGTTGCTGGGGATGCTTTCATATTCTTAAGAGGTGAGAATGGGGAGCTTCGTGTGGGCGTACGGAGAGCAATGAGACAGCAGGGGAATGTCCCATCGTCGGTTATTTCCAGTCACAGTATGCATCTGGGGGTTCTTGCAACTGCTTGGCATGCCATCTTGACCGGGACCATATTCACAGTTTATTATAAACCGAGGACTAGTCCTGCTGAGTTCATTGTTCCATATGACCAATACATGGAATCTCTAAAAAATAACTACACCATAGGGATGCGGTTTAAAATGAGGTTTGAGGGTGAAGAGGCTCCGGAACAGAGGTTTACTGGTACCATTGTTGGAATAGAAGATTCTGACACGAAAAGGTGGCCTGAATCCAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAACATTCCTCGTCCTGAGAGGGTTTCCCCTTGGAAGATAGAGCCCGCTCTTGCTCCTCCAGCTATGAACCCTCTTTCAATGCCCAGGGCTAAAAGACCTCGATCTAATGTACCAATTCAATCATCCCAGGATTCTTCTGTTCTAACTCGAGAAGCATCATCTAAAGTAAGTGCAGACCCTTCACCAGCAAATGGATTCCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGCGTGGAAATTTCGCAGAAAGTAATGAGTCCGACACAGCTGAGAAGTCTGCTGTTTGGCAACCTGTAGATGATGAGAAGGTTGATGTTGTTTCAATGTCACGGAGGTATGGTTCGGAGAGCTGGATGTCAATGGGAAGGCATGACACAGCCTATTCAGATCTTCTTTCAGGGTTTGGGGCTGGCGGAGATCCTTCGCATCCTTCCTTGGTAGATCAAATGGGTGGACCTGTATCCTATTCTTCCAGAAAGCACATGTTAGATCATGAAGGCAAACTTAATGTGCCTCATCCATGGCCAGTAATGCCCCCGGGTCTTTCGCTAAACCTCTTGGAGCCTAGTTCGAAAGGTTCTCCACGTGGCAGTGAAACACCTTACCAAGCTCGAGGAAATATGAGGTACGGAGCATTCAGTGAATATCCCATTGTTCATGGTCACAAAGCCGAGCATCCACATGGAAACATGATGCCGCCACCACCCCCAACTCAATATGAGAGTCCCTGCTCAAGAGACATGTCTAAATCAATGTCAGCAAAATTCTATGAGACTGCGAAACCAAAAGAAGGTGACTGTAAGCTATTCGGCATCTCACTTATCAGTAGTCCTAGTGCTGCTCTGGAGCCTTCTGTATCGCATAGAAATGTGACGAATGAGCCAGCTGGTCAAGGACATCTAAAATCACACCACCAACGCACTTCCGAAAGTGATCAGAAAACAGAACAATCAAAGGTTTTGAAATCGACAGATGGTCCGGTTATCGTTGATGACTATGACAAGCAGGCAAAAACTTCCCGGGTGCATCATAAAGATGGTCAGGCCAAAGCACCAAGCAGCTCTGCTAGGAGTTGCACTAAAGTCCACAAGAAGGGAATTGCGCTTGGTAGGTCCGTGGACCTGACGAAGTACAGCAACTATGATGAATTGGTTGCTGAATTGGATCAACTGTTTGAATTTGGGGGTGAATTAATGTCAGCAAAAAAGGATTGGCTTATCGTCTACACTGATAACGAGGGTGACATGATGCTTGTTGGGGATGATCCATGGCAGGAGTTCTGTGCCATGGTTCGCAAAATTTATATCTACCCCAAAGAGGAGATTCAGAAAATGAGCACAGGTACCTTAGGTTCAAGAAATGAAGAGAATCATTCAGCTAGTGAAGGAGCTGAGGCAAAAGAAGTTAAAAGTCAGCTGCACCAGAAGTTAAATTCAGAAAGTGTGGCTACGGTCCATGATAATAAGTAG 2568 0.4724 MASSEATTMKVNGNSHNNNSSEVNNNVNTSSSTPTSPKDAEAALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADQHMPVYDLPSKILCRVINVQLKAEPDTDEVFAQITLLPEQNQEENAAEKEPPLPPPTRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTGTIFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDTKRWPESKWRCLKVRWDETSNIPRPERVSPWKIEPALAPPAMNPLSMPRAKRPRSNVPIQSSQDSSVLTREASSKVSADPSPANGFPRVLQGQEFSTLRGNFAESNESDTAEKSAVWQPVDDEKVDVVSMSRRYGSESWMSMGRHDTAYSDLLSGFGAGGDPSHPSLVDQMGGPVSYSSRKHMLDHEGKLNVPHPWPVMPPGLSLNLLEPSSKGSPRGSETPYQARGNMRYGAFSEYPIVHGHKAEHPHGNMMPPPPPTQYESPCSRDMSKSMSAKFYETAKPKEGDCKLFGISLISSPSAALEPSVSHRNVTNEPAGQGHLKSHHQRTSESDQKTEQSKVLKSTDGPVIVDDYDKQAKTSRVHHKDGQAKAPSSSARSCTKVHKKGIALGRSVDLTKYSNYDELVAELDQLFEFGGELMSAKKDWLIVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSTGTLGSRNEENHSASEGAEAKEVKSQLHQKLNSESVATVHDNK 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30460g00002 855 MobiDBLite consensus disorder prediction 694 716 - -
Stsc30460g00002 855 MobiDBLite consensus disorder prediction 650 665 - -
Stsc30460g00002 855 FunFam Auxin response factor 718 812 - -
Stsc30460g00002 855 Gene3D - 147 252 IPR015300 -
Stsc30460g00002 855 MobiDBLite consensus disorder prediction 590 613 - -
Stsc30460g00002 855 MobiDBLite consensus disorder prediction 666 685 - -
Stsc30460g00002 855 MobiDBLite consensus disorder prediction 1 39 - -
Stsc30460g00002 855 SMART B3_2 150 252 IPR003340 GO:0003677
Stsc30460g00002 855 ProSiteProfiles B3 DNA-binding domain profile. 150 252 IPR003340 GO:0003677
Stsc30460g00002 855 FunFam Auxin response factor 313 385 - -
Stsc30460g00002 855 MobiDBLite consensus disorder prediction 813 855 - -
Stsc30460g00002 855 Pfam AUX/IAA family 766 805 IPR033389 -
Stsc30460g00002 855 Pfam AUX/IAA family 697 759 IPR033389 -
Stsc30460g00002 855 SUPERFAMILY CAD & PB1 domains 724 800 - -
Stsc30460g00002 855 MobiDBLite consensus disorder prediction 1 38 - -
Stsc30460g00002 855 Coils Coil 853 855 - -
Stsc30460g00002 855 MobiDBLite consensus disorder prediction 824 840 - -
Stsc30460g00002 855 ProSiteProfiles PB1 domain profile. 723 805 IPR000270 GO:0005515
Stsc30460g00002 855 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 42 812 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc30460g00002 855 MobiDBLite consensus disorder prediction 400 425 - -
Stsc30460g00002 855 MobiDBLite consensus disorder prediction 841 855 - -
Stsc30460g00002 855 Gene3D - 313 383 - -
Stsc30460g00002 855 Pfam Auxin response factor 276 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc30460g00002 855 Pfam B3 DNA binding domain 150 251 IPR003340 GO:0003677
Stsc30460g00002 855 SUPERFAMILY DNA-binding pseudobarrel domain 146 279 IPR015300 -
Stsc30460g00002 855 Gene3D - 719 812 - -
Stsc30460g00002 855 MobiDBLite consensus disorder prediction 380 433 - -
Stsc30460g00002 855 FunFam Auxin response factor 148 252 - -
Stsc30460g00002 855 MobiDBLite consensus disorder prediction 650 723 - -
Stsc30460g00002 855 CDD B3_DNA 148 250 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30460g00002 Stsc-Chr30460 34926 40343 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30460g00002 1 845 B3 DNA Binding Superfamily AT5G62000 63.740 0.0 1069
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc30460g00002 AUX_IAA 2.6e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30460g00002 - - aip:107612759 1543.1