Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30459g00009 ATGGCTTCCTCCAACAGACATTGGCCAAGCATGTTCAAATCCAAGCCTTGCAACCAGTTTCAGCATGACATCAACTCCCCTCTCGTCTCAACCACTGCACCTTGCAGATCAACCCCTTACAATCCTAATTCAGGGTGTGATGAGAAGAGTCCAGAACCGAAGCCAAGATGGAACCCAAAACCAGAACAAATTCGGATTCTGGAGGCGATATTCAATTCTGGAATGGTGAACCCTCCAAGGGACGAGATAAGGAAGATAAGGATACAGTTGCAGGAGTACGGTCAAGTGGGTGACGCCAATGTCTTTTACTGGTTCCAGAACCGCAAATCTAGGAGCAAGCACAAGCTTCGCCACCTCAATAATAACAAGAACAACACTCCATCACCACCGCAGCTGCCGCCGCCACAGTTCATCTCTGCCATTACAAACTCATCATCCTCCTCTTCCTCTGAGAAATCATCTCCCAAAGAATTCATCACTACCTTTGTCCCACAAGCTTTCACCGATGTGATGATGGTGCTGCCTAATTCCCCAACTGCCTCCGTGAACCAGAACTATTTTCATCAACACAACGACATCAACGCCAATAATAATCACCATCTTTTAATTCCTCCGCCGCCGCCGCTACCGATGGAACCATTCTTCCCTGTGTTCCATAACGGTGGCAGTAACAATAATAACAATGGTTTCATGATTGCAACTACTGAGATCTCTAATAATGTGATTAATCATCACCAACCTCCTCCTCATCATTTTGTTTACCCATCAATATCACACCATGCTCATCAAGAAAACGTTGATCCTTGCACTGATCTGCTTCTTAGTGAGATCATGAGCCATGGAGGAGGAGGAGGAGTAGGACCCTCCTCAAAGAAATACCAAGAACAAGACAAGGCAGCAGCAGCAGCAGCAGCGGCCACCTTCAAAATTAGGCACCCATCACAGCAGTACATCAGCTTCTGTCAAGCATCCACGCCGGTTTCAACCGTCGTTCTGCCTCCTCCTCCTCCTACTCCTCATTCTTCCATCACTGATAACACAACCGCCACACCTATTACTGTTCCATCCCCATTTCAAGGTGGTGGTGATGGCGACGGCGGTGGTGATGTGGCAGCGGGGAAATGTACGGTGTACATAAACGAGGTGGCATTCGAAGTTGGTGTGGGTCACTTTAATGTGCGTGAGGCTTTTGGTGATGAGGCGGTGCTGATCGAATCCTCCGGCCACGCCGTTCTCACCAATGACTGGGGCGTCACCCTCCACCCTCTCCAGCATGGCGCTTCTTATTATCTCATCTGGTTTCTTTCTTTCTTTCTCTAA 1320 0.4833 MASSNRHWPSMFKSKPCNQFQHDINSPLVSTTAPCRSTPYNPNSGCDEKSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRIQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLNNNKNNTPSPPQLPPPQFISAITNSSSSSSSEKSSPKEFITTFVPQAFTDVMMVLPNSPTASVNQNYFHQHNDINANNNHHLLIPPPPPLPMEPFFPVFHNGGSNNNNNGFMIATTEISNNVINHHQPPPHHFVYPSISHHAHQENVDPCTDLLLSEIMSHGGGGGVGPSSKKYQEQDKAAAAAAAATFKIRHPSQQYISFCQASTPVSTVVLPPPPPTPHSSITDNTTATPITVPSPFQGGGDGDGGGDVAAGKCTVYINEVAFEVGVGHFNVREAFGDEAVLIESSGHAVLTNDWGVTLHPLQHGASYYLIWFLSFFL 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30459g00009 439 FunFam WUSCHEL-related homeobox 11 54 121 - -
Stsc30459g00009 439 SUPERFAMILY Homeodomain-like 49 117 IPR009057 -
Stsc30459g00009 439 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 433 IPR044557 GO:0003700|GO:0050793
Stsc30459g00009 439 Gene3D - 54 119 - -
Stsc30459g00009 439 MobiDBLite consensus disorder prediction 23 59 - -
Stsc30459g00009 439 MobiDBLite consensus disorder prediction 118 156 - -
Stsc30459g00009 439 MobiDBLite consensus disorder prediction 137 156 - -
Stsc30459g00009 439 CDD homeodomain 53 115 IPR001356 GO:0003677
Stsc30459g00009 439 Pfam Homeodomain 54 114 IPR001356 GO:0003677
Stsc30459g00009 439 MobiDBLite consensus disorder prediction 23 45 - -
Stsc30459g00009 439 ProSiteProfiles 'Homeobox' domain profile. 50 115 IPR001356 GO:0003677
Stsc30459g00009 439 SMART HOX_1 52 119 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30459g00009 Stsc-Chr30459 47342 48830 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30459g00009 1 122 Wox Gene Family AT2G33880 80.645 1.38e-60 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Stsc30459g00009 Homeodomain 9.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30459g00009 - - pvu:PHAVU_006G179900g 367.081