Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30458g00006 ATGGGTGGTGGTGGGGGTGAGAAGAATTCCAAGGCCATGATGGTTGTGGCGAGTTTGGCTGAGTCCATAAAGGAGATTTCAGGGCTTCCAGAGTGCAACAACGTTTGCAAGAGGATGTATGGGAATCTGGTTAGGAGGGTGAAGCTTTTGAGCCCTCTCTTTGAGGAATTGAAGGACAGTGATGATGAGTCCCTCCTCACTGATGAACAAGTTGCAGCCTTTGAGTGTCTCAAGGTTGCATTGGATTCAGCTAAGACCCTTCTTAACTATGTCAACCAAGGGAGTAAGCTTTATCAGGCTTTGCAGAGGAATGATACAAGAGATAAGTTCCAACAAATAACTGAAAAAATTGAGGAGGCATTGTGTGGAATTTCCTACAACAAGCTTGAGATATCAGAGGAAGTTCAAGAACAGATTGAACTGGTGCATGCTCAATTCAAAAGAGCCAAAACTCCTACAGAATTTGCCGATTTACAGCTAGACTTAGATATGGAAGTAGCACAGAAAGAAAAAGACCCTGATCCTCCTGCCCTCAAAAGACTTTCTGAGAAGTTGCATTTGAGGACTATAAATGATCTGAAGAAAGAGTCTGCCGAATTACACGAATTGGTTATCACAAGTGGTGGGGAACCAGGGGACTATTTTGAGACAATTACATCCCTTCTTAGGAAGATGAAGGACTGTGTGCTAACCGAAAATCCCGAGGTTGATAGCAACGAGGGTGAAAAAATGCCAATTAAGCACAGGTCTCCTGTGATCCCAGATGATTTTCGATGTCCTATATCTCTTGAACTGATGAAAGACCCTGTAATTGTCTCTACTGGTCAGACATATGAAAGATCATGCATTCAGAAATGGCTTGATGCTGGTCATAAAACCTGCCCCAAGACGCAGCAGACACTTTTGCATACTGCCCTTACCCCTAACTATGTTTTGAAGAGTCTGATCGCTTTATGGTGTGAAAGCAATGGTGTCGAGCTACCAAAGAAGCAGGGGAGCTGCAGAGCAAAGAAATCCGGAAGCAACCATTCGGATTGTGACAGAACTGCTATTAATGCGTTATTGGATAAACTAGCAAATGGTGATATGGAGCAGCAGAGAGCAGCCGCGGGTGAACTCCGGTTGCTGGCAAAAAGGAATGCAGATAACAGAGTGTGTATTGCCGAGGCAGGAGCAATACCACTTCTTGTGGAATTGTTGTCATCTTCGGATCCTCGAACGCAGGAGCATGCTGTTACAGCACTCCTCAATCTTTCAATCAATGAGAGCAACAAAGGAACCATAGTAAATGCGGGAGCTATACCAGATATTGTAGATGTACTGAAAAGTGGCAGCATGGAGGCTAGAGAAAACGCAGCCGCAACACTCTTTAGCTTATCCGTTCTAGATGAGAACAAGGTTGCAATAGGAGCAGCTGGAGCTATCCCAGTTCTTATAAAGTTACTTTGTGAAGGTACTCCCAGAGGTAAGAAGGATGCCGCTACTGCCATCTTTAATCTTTCCATCTACCAAGGAAACAAAGCAAGAGCCATCAAAGCAGGTATAATAGCCCCGTTGATGCGATTTTTGAAGGATGCCGGGGGTGGTATGGTAGATGAAGCACTAGCTATAATGGCAATCCTTGCAAGCCACCATGAAGGAAGGATAGCGATTGGTCAGGCCGAGCCGATCCCTATTCTAGTGGAGGTTATACGAACGGGGTCTCCTCGCAACAGGGAGAATGCTGCAGCTGTATTGTGGTCGCTTTGCACGGGAGATCTAATGCAATTGAAACTAGCAAAGGAACTTGGCGCAGAAGAAGCGTTGCATGAATTATCTGAAAATGGCACTGATAGAGCTAAGAGAAAAGCAGGAAGCATATTAGAACTCTTACAGCGGATGGAAGGGGATCAGAATGTGCAAAGTTCTTAG 1911 0.449 MGGGGGEKNSKAMMVVASLAESIKEISGLPECNNVCKRMYGNLVRRVKLLSPLFEELKDSDDESLLTDEQVAAFECLKVALDSAKTLLNYVNQGSKLYQALQRNDTRDKFQQITEKIEEALCGISYNKLEISEEVQEQIELVHAQFKRAKTPTEFADLQLDLDMEVAQKEKDPDPPALKRLSEKLHLRTINDLKKESAELHELVITSGGEPGDYFETITSLLRKMKDCVLTENPEVDSNEGEKMPIKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIALWCESNGVELPKKQGSCRAKKSGSNHSDCDRTAINALLDKLANGDMEQQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSSDPRTQEHAVTALLNLSINESNKGTIVNAGAIPDIVDVLKSGSMEARENAAATLFSLSVLDENKVAIGAAGAIPVLIKLLCEGTPRGKKDAATAIFNLSIYQGNKARAIKAGIIAPLMRFLKDAGGGMVDEALAIMAILASHHEGRIAIGQAEPIPILVEVIRTGSPRNRENAAAVLWSLCTGDLMQLKLAKELGAEEALHELSENGTDRAKRKAGSILELLQRMEGDQNVQSS 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30458g00006 636 FunFam RING-type E3 ubiquitin transferase 12 127 - -
Stsc30458g00006 636 Pfam Armadillo/beta-catenin-like repeat 463 501 IPR000225 GO:0005515
Stsc30458g00006 636 Pfam Armadillo/beta-catenin-like repeat 380 419 IPR000225 GO:0005515
Stsc30458g00006 636 ProSiteProfiles U-box domain profile. 252 326 IPR003613 GO:0004842|GO:0016567
Stsc30458g00006 636 SMART Ubox_2 256 319 IPR003613 GO:0004842|GO:0016567
Stsc30458g00006 636 SUPERFAMILY RING/U-box 252 328 - -
Stsc30458g00006 636 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 391 433 IPR000225 GO:0005515
Stsc30458g00006 636 SUPERFAMILY ARM repeat 348 624 IPR016024 -
Stsc30458g00006 636 SMART arm_5 462 502 IPR000225 GO:0005515
Stsc30458g00006 636 SMART arm_5 421 461 IPR000225 GO:0005515
Stsc30458g00006 636 SMART arm_5 503 543 IPR000225 GO:0005515
Stsc30458g00006 636 SMART arm_5 544 584 IPR000225 GO:0005515
Stsc30458g00006 636 SMART arm_5 380 420 IPR000225 GO:0005515
Stsc30458g00006 636 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 326 IPR013083 -
Stsc30458g00006 636 FunFam RING-type E3 ubiquitin transferase 465 635 - -
Stsc30458g00006 636 Pfam U-box domain 253 323 IPR003613 GO:0004842|GO:0016567
Stsc30458g00006 636 CDD MLKL_NTD 16 147 - -
Stsc30458g00006 636 PANTHER U BOX DOMAIN-CONTAINING 38 624 - -
Stsc30458g00006 636 FunFam RING-type E3 ubiquitin transferase 253 326 - -
Stsc30458g00006 636 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Stsc30458g00006 636 CDD RING-Ubox_PUB 254 306 IPR045210 -
Stsc30458g00006 636 Gene3D - 9 127 IPR036537 GO:0007166
Stsc30458g00006 636 FunFam RING-type E3 ubiquitin transferase 350 464 - -
Stsc30458g00006 636 Gene3D - 430 526 IPR011989 -
Stsc30458g00006 636 Gene3D - 339 429 IPR011989 -
Stsc30458g00006 636 Gene3D - 527 635 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30458g00006 Stsc-Chr30458 48812 52276 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30458g00006 15 629 U-box Gene Family AT3G54850 66.396 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30458g00006 - - gmx:100777452 1040.41