Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30455g00003 ATGTCTCAAGGCTATTACTCAGAGTCATATCCTTCTTCTGATTCTGGATCTGATAACATTTCAGATGCTGCTTCAGCTGAACTCAAGCTCTACAGAGCATTCATTTTCTCAGCACCAATCTTCTTCACTTTCATTCTCCTCTTCCTCTTTTATGTCTTCTATCTTCGACCCAGAAGGGTTGATTGGTCCTCCCTTAGGATGAGACCCTTTTCTTTTCCTCCTCCTCACTCTAACTCCAACACCATCTCCACGTGGGATATTGGCCTGAAGAAAGAATTCAGAGAGATGCTGCCTATTATTGTCTACAAGGAAAGCTTCTCTGTCAAAGATACCCTATGCTCAGTGTGCCTTTTGGACTACCAAGCAGAGGATAGGCTTCAACAGATACCTGCATGTGGCCATACATTTCACATGAGCTGCATTGATCTTTGGCTTGCCAGCCACAGCACCTGCCCTCTCTGCCGCTTGTCCCTACTAGCTTCGGCTAAATCTTCAACAGAGCCTTCCAACCTGCAGGTCGATGGGCCACAGAGCAATGAGGAAACACAGACCATAGAATCATCCGAGTTGCAATCTACGAGTCATGTAGAAACCACTGTTTCTCAGAATGTCTCAGGAGAGGTGTCAATTGTCTCTCACTGCATCGATGTTGAAGGACAAAATGAGCAAAACAATCAGTAG 681 0.4537 MSQGYYSESYPSSDSGSDNISDAASAELKLYRAFIFSAPIFFTFILLFLFYVFYLRPRRVDWSSLRMRPFSFPPPHSNSNTISTWDIGLKKEFREMLPIIVYKESFSVKDTLCSVCLLDYQAEDRLQQIPACGHTFHMSCIDLWLASHSTCPLCRLSLLASAKSSTEPSNLQVDGPQSNEETQTIESSELQSTSHVETTVSQNVSGEVSIVSHCIDVEGQNEQNNQ 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30455g00003 226 MobiDBLite consensus disorder prediction 166 196 - -
Stsc30455g00003 226 FunFam RING-H2 finger protein ATL7 79 160 - -
Stsc30455g00003 226 SUPERFAMILY RING/U-box 97 160 - -
Stsc30455g00003 226 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Stsc30455g00003 226 CDD RING-H2_EL5-like 113 155 - -
Stsc30455g00003 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 160 IPR013083 -
Stsc30455g00003 226 Pfam Ring finger domain 113 155 IPR001841 -
Stsc30455g00003 226 PANTHER OS11G0150450 PROTEIN 41 203 - -
Stsc30455g00003 226 SMART ring_2 113 154 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30455g00003 Stsc-Chr30455 14583 17333 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30455g00003 25 226 C3H Transcription Factor Family AT4G10150 51.707 2.04e-64 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30455g00003 K19039 - gmx:100794211 261.536