Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30452g00004 ATGTTATCTCGCTTGAGTCCGCCCTATATTCACACAGCCACCTTTCTCTCGCCGGAGCTTCACCAGCCTCAGCGCTTTCTTCTGCCGTTGAGCAATACATGCAGACCTACAACTTCCTTTCACTTTCGCTTTCAATTAGAAAGGAGAAGAAAACCAGGGCCAAGGCGAAGACGCAGCAACGGTTGTTCTTGTTGTGGTTCTTCCTCTGAGTGGGAAGTTCAGGAAGCAGGTATAGCTGTGTCTACATTCCTTCAGCGGTTAGGGCTGTCAGAGCAGGAGTCCTTATCCATTGCATCCAAGTCACCGTCTTACTCCAACATGTTGGTGGAGAGTGTCAGGGATTTGGATCAACATTCTATGTGGAACTCCGATTCCGCCTCCTTGGACTTCAGGGAAAAGCTTCTTCACATTGCCTCCCTCAAAGGTGACAACGGAAAACTCCCTTACTTTGAGAGTCTTGGCTTCACTCTTTCTTCCTCTATCACTCTCGCCAGGTATCTCTCCTGTCAGGACCTCCCATCTCTCATGCAGAAAGTTGCATCCATCAAGGACCTCTTATTTTCACGTCAAGCTGATCAGCATCTCATCAACAACATTCGTCGCATGATGCTCCACTTGTCAATTCCGGTCGACGATGATCTACAGCATACTCTCTCCTTCTTTGAGAAGCTTGAAGCCAAGCGTGGAGGCTTAAGCGTTTTGCTCTCTGCCAAAGACATTGCCTTCTGCCATTTGATCGAATCCTTTCCTCGTCTACTTTCACTCTCACTGGATAACCACATCATTCCTATTATTGATTTTCTCCACAATATTGGTGTCCCCAGATCTCATATCCCAACCATAATACTCTCTTTTCCGCCTATTCTGTTCTGGACCATTCAACTCCTTAAAGCTAGACTCCTCGCCTTCAAACAGATTCATGTGGTGGATAAAGATTATATCAAGATGTTGATCAAATATCCTTGGGTTCTATCTACAAGTATTCAAGAGAACTATGAGGAGGTTCATGCCTTTTTTCTTTCTGAGAAGGTTAGAAAGATATGTATTGACTGTGCAATCAAAGGCCAACCTTACCTATTGGGTTGTTCAACCGGCAAGCTAAAGACGATGTTGGATCAGTTGGCTGATCTTGGAGTTAAAGGAAACAAGTTAGATAGGATTATTGCTAGAAGCCCGCAAGTACTATTGCGGAAGCCCCAAGATTTTCTACAGATTGTTCTGTTCTTTGAAAATATGGGCTTGGATAGAGAAATGATTGGGAGAATTGTTTCTCGTTGCCCAGAAATTTTCGCAGCCAGCATTGAGAAAACTCTTCAGAGGAAGATTGAATTCCTTTCTGGGGTTGGTGTTTCTGAAGCTTATCTTCCTGGGGTAATCAGAAAGTATCCAGAATTACTTGTAACTGACACGGATAGAACTATGCTGCATCGGCTGAGGTACTTGATGAAGTTAGGACTCTCGGAGAAAGAAGTTGGGTTTATGGTGCGCACATTTTCTCCTCTCCTTGGGTATAGTATAGAGGAGGTTCTGAGACCAAAAGTAGAATTCTTAGTGAAGTCAATGGGGAAGCCGGTACGAGAAGTTGTGCATTACCCTCGGTATTTTAGCTATTCATTAGAAAAGAAGATAAAGCCACGATACTTTGTACTCAAGGGAAGGCAAGTTGAATGTAGCTTGAAGGATATGCTGGGAAAAAACGACGAGGAATTCGCTGCAGAATTTATACTCTCTTCCGATAATGTGTTGTAA 1749 0.4391 MLSRLSPPYIHTATFLSPELHQPQRFLLPLSNTCRPTTSFHFRFQLERRRKPGPRRRRSNGCSCCGSSSEWEVQEAGIAVSTFLQRLGLSEQESLSIASKSPSYSNMLVESVRDLDQHSMWNSDSASLDFREKLLHIASLKGDNGKLPYFESLGFTLSSSITLARYLSCQDLPSLMQKVASIKDLLFSRQADQHLINNIRRMMLHLSIPVDDDLQHTLSFFEKLEAKRGGLSVLLSAKDIAFCHLIESFPRLLSLSLDNHIIPIIDFLHNIGVPRSHIPTIILSFPPILFWTIQLLKARLLAFKQIHVVDKDYIKMLIKYPWVLSTSIQENYEEVHAFFLSEKVRKICIDCAIKGQPYLLGCSTGKLKTMLDQLADLGVKGNKLDRIIARSPQVLLRKPQDFLQIVLFFENMGLDREMIGRIVSRCPEIFAASIEKTLQRKIEFLSGVGVSEAYLPGVIRKYPELLVTDTDRTMLHRLRYLMKLGLSEKEVGFMVRTFSPLLGYSIEEVLRPKVEFLVKSMGKPVREVVHYPRYFSYSLEKKIKPRYFVLKGRQVECSLKDMLGKNDEEFAAEFILSSDNVL 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30452g00004 582 Pfam mTERF 265 571 IPR003690 GO:0003690|GO:0006355
Stsc30452g00004 582 SMART mt_12 385 415 IPR003690 GO:0003690|GO:0006355
Stsc30452g00004 582 SMART mt_12 456 487 IPR003690 GO:0003690|GO:0006355
Stsc30452g00004 582 SMART mt_12 420 451 IPR003690 GO:0003690|GO:0006355
Stsc30452g00004 582 SMART mt_12 492 524 IPR003690 GO:0003690|GO:0006355
Stsc30452g00004 582 SMART mt_12 350 380 IPR003690 GO:0003690|GO:0006355
Stsc30452g00004 582 SMART mt_12 243 274 IPR003690 GO:0003690|GO:0006355
Stsc30452g00004 582 SMART mt_12 525 556 IPR003690 GO:0003690|GO:0006355
Stsc30452g00004 582 SMART mt_12 314 345 IPR003690 GO:0003690|GO:0006355
Stsc30452g00004 582 FunFam Mitochondrial transcription termination factor family protein 365 578 - -
Stsc30452g00004 582 PANTHER CGI-12 PROTEIN-RELATED 179 371 IPR003690 GO:0003690|GO:0006355
Stsc30452g00004 582 Gene3D Transcription termination factor 3, mitochondrial 349 579 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30452g00004 Stsc-Chr30452 18240 21990 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc30452g00004 mTERF 8.3e-91 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30452g00004 K15031 - gmx:100802127 660.218