Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30450g00004 ATGGAACCAAACGAGGAATCAAAGGGTAAAACTCCAGCACCTGATTCTCCTTCTGAGATTGAGCAGCTGGGGATATCCACAACAGGGTTCTCTCCTTTGGAGTTTGGTTCTCAACCATTCTCATCAGCTTTTGATGAATCCTTTGACATTATTGATGATACCTCTTTCATGGAGTTTGAAGCATTCTCAACAGCTATGAACCAACCACCTTCACAACCACCCCCACCTACAACTACAACCACCACCACCACTACGGGTTTGGACAACATTGGTGGGGCTGTTCCTCAGCCATTGGAATGCTTGCACGGGAATCCTGTTCCACCTTTTTTGTCTAAAACCTTCGACCTTGTTGATGACCCTTCTTTGGATCCTATAATCTCATGGAGCTCCACTGGTGCTAGCTTCGTGGTGAGGGACCCTATGGAGTTTTCAAGGCTCGTGTTGCCCCGGAATTTCAAGCACAACAATTTCTCCAGTTTTGTTCGCCAGCTGAATACTTACGGATTCCGCAAGATTGACACTGACAAGTGGGAGTTTTTCAATGAATATTTCCAGCGAGGGAAGAAGCACTTACTGAAGAACATCCAAAGGCGCAGGTCAACTCAATCGCAGCAGGTTGGTAGCTGCATTGGGCCTTCTAGTGATGCAGGGAGACCTGGACTCGAGGTTGAAATAGAGCTACTGAGGAAGGAGAGAAGTCTATTAATGCAGGAGGTTGTTGATTTGCAGCAACAACAGCGAAGAACGGTTCACCATGCAGGAGAAGTGAATCAGAGGCTAGAATCTGCAGAGCAAAGGCAGAAACAAATGGTTTCCTTCTTGGCCAAGCTATTTCAGAACCCAACCTTCTTGGCTCGCCTTAAGGATAAGAAGGAACAAAGAGAGATTGAATCTCCAAGAGCAAGAAGGAAGTTTATCAGGCATCAACACGAAGCAGGAACATCCGAAACTCCCAAAGGTCAGGTAGTGAAGTACCAACCTGATTGGAAAAATACAACAGTCTCTTCTGAAATTCCGGAACTAAGTCCAGCTTCCTTTGAACAATCTCCTCAATATCTCTCACAGGACTTGGCAAGAGAAATTTATGCTGGTGCAGAGAATCCAACTTCAGGCGCGTTGCACGAGGCCATGCCAACTCTAGGAATTGTTGGAGAAGGATCATCAAGCTATGAACTTGAAGATCCTCTTTCCAAAGGGAAAAATGTCTTCAACCCAAGTCAAGATGTCTATTCAGAATATTTTGTTTCCTTCCCAGATGATTTGTCAAAGGAAAGAGAGTTCCCTGTGTTCTCCCCTGTTGGAACTGAAGGCATCATCAAACAAGAAGATGTATGGGACCCTACCTTCAACACTAGTGTTGCTGCTTCAAGTTCTGGGAATGAGCTGTGGGGCAATCCTGTTAGCCATGTAGTACCAGAATTCGGAGGCACAAGTGGCGTGTTGGACATATGGGATATTGGCTCCGGAAGTTTAGGTATCGATGAGTGGCCAGCTGATGAATCTCCAACGGAGGAAAAGGAGAGTCAAGGTGGCCATCCAAAAGATGATAGAACTTAA 1557 0.4573 MEPNEESKGKTPAPDSPSEIEQLGISTTGFSPLEFGSQPFSSAFDESFDIIDDTSFMEFEAFSTAMNQPPSQPPPPTTTTTTTTTGLDNIGGAVPQPLECLHGNPVPPFLSKTFDLVDDPSLDPIISWSSTGASFVVRDPMEFSRLVLPRNFKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEYFQRGKKHLLKNIQRRRSTQSQQVGSCIGPSSDAGRPGLEVEIELLRKERSLLMQEVVDLQQQQRRTVHHAGEVNQRLESAEQRQKQMVSFLAKLFQNPTFLARLKDKKEQREIESPRARRKFIRHQHEAGTSETPKGQVVKYQPDWKNTTVSSEIPELSPASFEQSPQYLSQDLAREIYAGAENPTSGALHEAMPTLGIVGEGSSSYELEDPLSKGKNVFNPSQDVYSEYFVSFPDDLSKEREFPVFSPVGTEGIIKQEDVWDPTFNTSVAASSSGNELWGNPVSHVVPEFGGTSGVLDIWDIGSGSLGIDEWPADESPTEEKESQGGHPKDDRT 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30450g00004 518 PRINTS Heat shock factor (HSF) domain signature 147 159 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc30450g00004 518 PRINTS Heat shock factor (HSF) domain signature 109 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc30450g00004 518 PRINTS Heat shock factor (HSF) domain signature 160 172 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc30450g00004 518 MobiDBLite consensus disorder prediction 20 38 - -
Stsc30450g00004 518 Gene3D - 101 199 IPR036388 -
Stsc30450g00004 518 MobiDBLite consensus disorder prediction 491 518 - -
Stsc30450g00004 518 Pfam HSF-type DNA-binding 109 198 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc30450g00004 518 SMART hsfneu3 105 198 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc30450g00004 518 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 95 330 IPR027725 -
Stsc30450g00004 518 MobiDBLite consensus disorder prediction 1 38 - -
Stsc30450g00004 518 SUPERFAMILY "Winged helix" DNA-binding domain 104 198 IPR036390 -
Stsc30450g00004 518 MobiDBLite consensus disorder prediction 502 518 - -
Stsc30450g00004 518 FunFam Heat stress transcription factor B-4 102 199 - -
Stsc30450g00004 518 MobiDBLite consensus disorder prediction 65 92 - -
Stsc30450g00004 518 Coils Coil 225 245 - -
Stsc30450g00004 518 ProSitePatterns HSF-type DNA-binding domain signature. 148 172 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30450g00004 Stsc-Chr30450 24492 27637 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30450g00004 91 475 HSF AT5G03720 50.380 6.78e-106 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc30450g00004 HSF_DNA-bind 1.1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30450g00004 K09419 - qsa:O6P43_005885 577.4