Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30450g00002 ATGAGCATGGAGAGTTCACGTAGACCCTTCGATAGATCGAGAGAGCCAGGGCCTAAGAAGCCTCGATTAATGGAAGACCCGAATCAGAGACCGTTTCCTCAGCGACAATTGGCTTCGGGGATTACAACGATGTCGTCCACGAGGTTCAGGGCAAACGACAGGGATTCGGAAGGCAGCGAATTCGGCCGAGGCGGTGGCGGTTACCAGCCTCAGCCGCTGCCGCAGCACCATGAGCTTGTGAATCAGTACAAGACAGCTCTTGCTGAGCTTACTTTCAATTCGAAACCGATCATTACCAATTTGACTATAATTGCAGGGGAGAATCAATCGGCGGCGAAGGCGATCGCCGCCACTGTTTGTGCTAACATTATAGAGGTTCCTAGTGATCAAAAGCTGCCATCTCTTTATCTCTTAGACAGTATCGTGAAGAACATTGGGCGGGATTATATAAAGTACTTTGCTGCCAAACTACCTGAGGTATTCTGCAAGGCATACAGACAGGTTGAACCTGCTGTCCATCAAAGTATGAGACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGACCCTTCAGGCTATTGAGAAGGAACTGGGCTTTACTCCACCAGTCAATGGTTCAGCTTCCTCTTCTGCTACCATCAGGAGTGATTCAGAGTCCCCACGTCCACCTCATGGCATCCATGTGAACCCCAAGTATTTAGAAAGGCAGCGTCTTCAGCAGTCCAGCAGGATTAAAGGAGTTGATGAAATTACTGGAGCATTTGCGAACTCTAATGAGGACCCAGAGAGGCCAGATAGAACTTTGGGTGTTGCGCGGCCATGGTTGGATGCTAGTGTTAGTACCTCAAGAGATGCATTTAATGATTCTGTTTTGGAAAAGAGTGTTGGTGTATCCTATGGAGGCCATGAATATGGTTCTGATCTTTCACGGAATTTAGGCTCAGGTATGGGCAGAGCTGGTGACAAAACTTGGTTTAAAGCAGGTGGAGCTGCGGGAACCATATCTGCCCAAAAAAATGGTTTCAGTGTGAAGCATAGTTTTTCAAATACTGAAGCACCAAAGTATAATCAGCCAACGCAAAACATAAATAGCATTCGGAGCAGCATGATGTCAAGTAGCTGGAAAAATTCTGAGGAAGAGGAGTACATATGGGATGAGATGAATTCTAGATCGACTGGTCATGGAGTACCAAATGTCTCTAACAACTTGAGCAAAGATTCATGGCCGGCGGATGATGAGAACTTTGAAGTTGAAGATCACGTCCAAATACGAAACCCATATGGGGCAAATCTTGATAGAGAATTGCCCACTCTAAGCAATGAAAAGAAACAATTTTCCTCATTTCAGCGTCATCCATCAGTGTCGTGGCAACTACAAGAGCAGCACTCGCTTGAAGAGTTGAATCAAAAGCCAGGTCACTCAGAAGGATTTATGTCCACTCTTAGTGGTTTGCCAGCCGATACAAATTCTGTTGTCAGGATGGGGAATCGGTCTTTCTTGCCAAATGCAACAACAGGACTGCCAGGAATTGTGGGACAACAGCAACTTCATTCAATTGGAGTCGAATCCCCTTCTGGGCAGTCACCCTTGCGGCAACAGCCTTCACCACCACCAGTTGGTAACTTGCGAAGACCACATCAAAAGGATTTGCCAGGTTCATTTCAGTCAAGGCATCAGCAGCAGCTTCGCTTGTCTCACAGTGAAGTTACTGAGAAACCTCCCCTATCTAGAGTTCCACTTGCCAAAGAGAGCCTTGAACAGTCAACCACAGGTAGTTTGAAAGCTGCTGCTCTAAAGGGTGGAACATTATCCAGCATGTCCAATGCAAGTCGCCTGGATTCAAGGAATCATCCGTCTCAATTAGGGGTCCGGCCTACCCGCTCAGCTGGGCCTTCCCCTGCCACATTAATTTCTTCAGTGTCTGCAATTTTAGCACCATCTTCATTAGGTCCTTCAAATAATAGTTTATCTGCTTTGCCAAAAGTACCGGAAAGAAAGGCTGGGCAATTGACAAGGGCATCAACTCTACCACGGGCTTCCTCTGATATCAACAGTGCCTCGGCTCAGACAAGTTCCAGCAGTAATACAAATCCGATTGCAAATCTTCTAAGCTCTTTAGTTGCGAAGGGTTTGATATCCGCAGAAAAAGAATCACAAACTAAGGTGACATCTGAGCTCCCGGCTCAGTTGGAAGATCAAAGAGACAGCATTACCACCAGTAGCTCTTTGCCTGTTGCTTCAGTGTCTGGTTCTGAAGCTGTCCAAGTACCTTCTGCCACAGATGATGTAAATGATACTGCAAAATCCCCAATATCATTGTCTGAAACAACCAGCACAGAAATCAGGAACCTCATTGGCTTTGAGTTTAAGCCTGATGTAATCCGAGAAGTGCACCCACCTGTTATTAAAGGATTATTTGACGAANNNNNNNNNNTCTGTGGCTGTAGGCTTAAATTCCAACAACAGTTAAATAGACACTTGGATTGGCATGCCACAAGGGAGAAAAATGATCTAACTAGGGCATCAAGAGGATGGTTTCCGAAGTCAATTGACTGCGTTGTTAGCAAGGTTGAATGTTCATCCGAGTCCGAGTTCACTGAATCTGTCGATACACACAGCAAGGAGACAAGAAGCACTCAAGAGGATTCAATGGTTCAAGCAGATGAAAGCCAATGCTTGTGTGTGTTGTGTGGTGACGTATTTGAAGATTTCTACTGTCAAGAAAGCGGTGAGTGGATGTTCAAAGGGGCGGTAGACATGGCTAACTCAGATAGTGAGATGGAAAATAGAAATGCGAGTACTGCAAGGGGTCCCATTATTCACGCAAGATGCTTTTCCGGGAACTCAATATCCAGTGTCGTCAAGATGGAACAAGCTTAA 2886 0.4567 MSMESSRRPFDRSREPGPKKPRLMEDPNQRPFPQRQLASGITTMSSTRFRANDRDSEGSEFGRGGGGYQPQPLPQHHELVNQYKTALAELTFNSKPIITNLTIIAGENQSAAKAIAATVCANIIEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAAKLPEVFCKAYRQVEPAVHQSMRHLFGTWKGVFPPQTLQAIEKELGFTPPVNGSASSSATIRSDSESPRPPHGIHVNPKYLERQRLQQSSRIKGVDEITGAFANSNEDPERPDRTLGVARPWLDASVSTSRDAFNDSVLEKSVGVSYGGHEYGSDLSRNLGSGMGRAGDKTWFKAGGAAGTISAQKNGFSVKHSFSNTEAPKYNQPTQNINSIRSSMMSSSWKNSEEEEYIWDEMNSRSTGHGVPNVSNNLSKDSWPADDENFEVEDHVQIRNPYGANLDRELPTLSNEKKQFSSFQRHPSVSWQLQEQHSLEELNQKPGHSEGFMSTLSGLPADTNSVVRMGNRSFLPNATTGLPGIVGQQQLHSIGVESPSGQSPLRQQPSPPPVGNLRRPHQKDLPGSFQSRHQQQLRLSHSEVTEKPPLSRVPLAKESLEQSTTGSLKAAALKGGTLSSMSNASRLDSRNHPSQLGVRPTRSAGPSPATLISSVSAILAPSSLGPSNNSLSALPKVPERKAGQLTRASTLPRASSDINSASAQTSSSSNTNPIANLLSSLVAKGLISAEKESQTKVTSELPAQLEDQRDSITTSSSLPVASVSGSEAVQVPSATDDVNDTAKSPISLSETTSTEIRNLIGFEFKPDVIREVHPPVIKGLFDEXXXXCGCRLKFQQQLNRHLDWHATREKNDLTRASRGWFPKSIDCVVSKVECSSESEFTESVDTHSKETRSTQEDSMVQADESQCLCVLCGDVFEDFYCQESGEWMFKGAVDMANSDSEMENRNASTARGPIIHARCFSGNSISSVVKMEQA 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30450g00002 961 MobiDBLite consensus disorder prediction 675 700 - -
Stsc30450g00002 961 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 27 950 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Stsc30450g00002 961 ProSiteProfiles CID domain profile. 75 203 IPR006569 -
Stsc30450g00002 961 MobiDBLite consensus disorder prediction 554 569 - -
Stsc30450g00002 961 MobiDBLite consensus disorder prediction 204 219 - -
Stsc30450g00002 961 MobiDBLite consensus disorder prediction 731 773 - -
Stsc30450g00002 961 CDD CID_Pcf11 80 196 IPR047415 -
Stsc30450g00002 961 SMART 558neu5 78 200 IPR006569 -
Stsc30450g00002 961 MobiDBLite consensus disorder prediction 650 700 - -
Stsc30450g00002 961 MobiDBLite consensus disorder prediction 434 636 - -
Stsc30450g00002 961 MobiDBLite consensus disorder prediction 442 467 - -
Stsc30450g00002 961 SUPERFAMILY ENTH/VHS domain 74 205 IPR008942 -
Stsc30450g00002 961 MobiDBLite consensus disorder prediction 1 26 - -
Stsc30450g00002 961 MobiDBLite consensus disorder prediction 32 49 - -
Stsc30450g00002 961 FunFam polyadenylation and cleavage factor homolog 4 73 200 - -
Stsc30450g00002 961 MobiDBLite consensus disorder prediction 584 636 - -
Stsc30450g00002 961 MobiDBLite consensus disorder prediction 475 531 - -
Stsc30450g00002 961 MobiDBLite consensus disorder prediction 1 77 - -
Stsc30450g00002 961 MobiDBLite consensus disorder prediction 201 231 - -
Stsc30450g00002 961 Pfam CID domain 84 194 IPR006569 -
Stsc30450g00002 961 Gene3D - 73 200 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30450g00002 Stsc-Chr30450 9520 15963 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30450g00002 787 946 C2H2 Transcription Factor Family AT4G04885 35.542 3.79e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30450g00002 K14400 - gmx:100807857 1128.24