Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc30449g00003 | ATGTCAATGTTGGTTACTGAAGATGACAACAACAACAACAACAATGATAAGCCTCATGTTGTTGTTGACATAGACAATAATGTCTCTCATGGTAGTGGTAGTAGCTGTGTCGGCAATGAAGGTTGTGCTTCTTCTGAGACCAGTGAGGAACAACAACAACAAAGTAGTTCCCATGATTCTGGCTCCGAGATTGTTGCTGGAGCCATTGAGAAAGAGAGAGGGTCTTCAGTTTCATCAGATCAATGTTCTGTGGATCTGGAGAGTGATGTGGATAAGGTACGGCATTTAGATTTAGATCACAATAATAATAACAAGGTGGAGAGGGATTGCAGGATTTGTCACCTAAGCATGGATATGACCAACCATGAATCTGGTGGGTCCCCCATTGAACTTGGTTGCTCTTGTAAGGATGATTTGGCTGCTGCACATAAACACTGTGCTGAGGCTTGGTTCAAGATCAAGGGCAACAACCTGTTAATTGATGATGCAGTTGATCTGAGTAAAGATTCACTCTGGTCATCGACTTGGTAA | 531 | 0.4256 | MSMLVTEDDNNNNNNDKPHVVVDIDNNVSHGSGSSCVGNEGCASSETSEEQQQQSSSHDSGSEIVAGAIEKERGSSVSSDQCSVDLESDVDKVRHLDLDHNNNNKVERDCRICHLSMDMTNHESGGSPIELGCSCKDDLAAAHKHCAEAWFKIKGNNLLIDDAVDLSKDSLWSSTW | 176 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc30449g00003 | 176 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Stsc30449g00003 | 176 | MobiDBLite | consensus disorder prediction | 27 | 62 | - | - | |
Stsc30449g00003 | 176 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 96 | 169 | IPR013083 | - | |
Stsc30449g00003 | 176 | Pfam | RING-variant domain | 110 | 155 | IPR011016 | GO:0008270 | |
Stsc30449g00003 | 176 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - | |
Stsc30449g00003 | 176 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 102 | 157 | IPR011016 | GO:0008270 | |
Stsc30449g00003 | 176 | SMART | ringv_2 | 109 | 157 | IPR011016 | GO:0008270 | |
Stsc30449g00003 | 176 | SUPERFAMILY | RING/U-box | 105 | 156 | - | - | |
Stsc30449g00003 | 176 | PANTHER | ZINC FINGER, RING-CH-TYPE | 16 | 157 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc30449g00003 | Stsc-Chr30449 | 19381 | 21911 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc30449g00003 | 50 | 158 | C3H Transcription Factor Family | AT5G05830 | 51.818 | 1.84e-26 | 98.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc30449g00003 | - | - | adu:107457785 | 251.521 |