Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30449g00003 ATGTCAATGTTGGTTACTGAAGATGACAACAACAACAACAACAATGATAAGCCTCATGTTGTTGTTGACATAGACAATAATGTCTCTCATGGTAGTGGTAGTAGCTGTGTCGGCAATGAAGGTTGTGCTTCTTCTGAGACCAGTGAGGAACAACAACAACAAAGTAGTTCCCATGATTCTGGCTCCGAGATTGTTGCTGGAGCCATTGAGAAAGAGAGAGGGTCTTCAGTTTCATCAGATCAATGTTCTGTGGATCTGGAGAGTGATGTGGATAAGGTACGGCATTTAGATTTAGATCACAATAATAATAACAAGGTGGAGAGGGATTGCAGGATTTGTCACCTAAGCATGGATATGACCAACCATGAATCTGGTGGGTCCCCCATTGAACTTGGTTGCTCTTGTAAGGATGATTTGGCTGCTGCACATAAACACTGTGCTGAGGCTTGGTTCAAGATCAAGGGCAACAACCTGTTAATTGATGATGCAGTTGATCTGAGTAAAGATTCACTCTGGTCATCGACTTGGTAA 531 0.4256 MSMLVTEDDNNNNNNDKPHVVVDIDNNVSHGSGSSCVGNEGCASSETSEEQQQQSSSHDSGSEIVAGAIEKERGSSVSSDQCSVDLESDVDKVRHLDLDHNNNNKVERDCRICHLSMDMTNHESGGSPIELGCSCKDDLAAAHKHCAEAWFKIKGNNLLIDDAVDLSKDSLWSSTW 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30449g00003 176 MobiDBLite consensus disorder prediction 1 20 - -
Stsc30449g00003 176 MobiDBLite consensus disorder prediction 27 62 - -
Stsc30449g00003 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 169 IPR013083 -
Stsc30449g00003 176 Pfam RING-variant domain 110 155 IPR011016 GO:0008270
Stsc30449g00003 176 MobiDBLite consensus disorder prediction 1 62 - -
Stsc30449g00003 176 ProSiteProfiles Zinc finger RING-CH-type profile. 102 157 IPR011016 GO:0008270
Stsc30449g00003 176 SMART ringv_2 109 157 IPR011016 GO:0008270
Stsc30449g00003 176 SUPERFAMILY RING/U-box 105 156 - -
Stsc30449g00003 176 PANTHER ZINC FINGER, RING-CH-TYPE 16 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30449g00003 Stsc-Chr30449 19381 21911 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30449g00003 50 158 C3H Transcription Factor Family AT5G05830 51.818 1.84e-26 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30449g00003 - - adu:107457785 251.521