Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30449g00002 ATGACCGAAGAAGAAGACCGACCATCCGTTGAACCAATCGCCGGCAATGGCGATGCTCTTCACAAAGACGGAGGAGGAGGAGGTGTGGCCGAGACGGAGCAGGCGGGAGGCGATGCGGAGATGATGGTAGTTGGTGATGGTGAGGGCAATAGTGGTGTTGGTGGTGCGGCGGGAAAAGTGAAGGGGCCGTGGTCTCCGGAAGAGGATGCGTTACTGAGCCGATTGGTGGGGCAGTTTGGAGCGAGGAATTGGAGCATGATCGCCAGGGGAGTTCCAGGCCGGTCAGGGAAGTCATGCCGCCTCCGATGGTGTAACCAACTCGACCCTTGTGTTAAACGCAAGCCTTTCACTGAGGAAGAAGATAGCATTATAGCATCAGCCCATGCAATCCATGGAAACAAGTGGGCAGCTATTGCAAGGCTTCTTCCTGGTAGAACAGATAATGCTATCAAGAACCACTGGAATTCTACCCTAAAGCGCAGGTGTACGGAACAGGGAAGATATGTCCCTGCACGTGTTGAAGCGATGGAAGATGGTAGCACTGAGAAAACAAAGGCATCCTCTGAAGAAACCCTGTCAGTTGGGGATATGAATTCATATCCTATACAAGTTAGAAATGTTGTGATGAATACTGAAATTAAACAGCACGATGATAAACCTTCGACTCCAAGAAATGATGTTTCTGAAGTGGAGCAAAATCCAACCCTTCATCGACCAATAGCACGTATTAGTGCATTTAGTGTTTATAATCCTACTAGCAGGCCTACTAATGGATCATCAAGTTCAAAGTTTCTACCATTGCAAAGCCCTTTGATCCAACTACCCAAAGCAGGTGAAGGAGCCTGCAAATTATTTGATGGTATTGGATGTGAGCCAATGGTTCCATTGCAATGTGGTCATGGATGCTGTGCGCCGGAATCAGGGGGAAGCCATTCTCATGGTTCTTCGCTATTAGGTCCCGAGTTTGTTGACTATTTGGAATCTCCACCTTTCTTAAGTCATGAACTGATTTCCATAGCTACAGACCTAAATAACATGGCATGGATCAAGAGTGGCCTTGAGAACCATGGAGGGGCCAAAGTAACTGATAGTGCCACAAACTTGACAGCATCACAGGGGGTTGCTACTGCTTCACAAACGGGATTCTTAGGCCAAGGCCAAAAGAATGACTACATGCAAATGCAAATGCAATATGAGGAGGGATCAGGAAATACCAGGTTTCTGGGTGCAAATACAATGAAAGAAATGTTATCATCGAAGATGCCTCGACAACATTTCGCAATGCCTGCAGAAGTTTGA 1299 0.4734 MTEEEDRPSVEPIAGNGDALHKDGGGGGVAETEQAGGDAEMMVVGDGEGNSGVGGAAGKVKGPWSPEEDALLSRLVGQFGARNWSMIARGVPGRSGKSCRLRWCNQLDPCVKRKPFTEEEDSIIASAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLKRRCTEQGRYVPARVEAMEDGSTEKTKASSEETLSVGDMNSYPIQVRNVVMNTEIKQHDDKPSTPRNDVSEVEQNPTLHRPIARISAFSVYNPTSRPTNGSSSSKFLPLQSPLIQLPKAGEGACKLFDGIGCEPMVPLQCGHGCCAPESGGSHSHGSSLLGPEFVDYLESPPFLSHELISIATDLNNMAWIKSGLENHGGAKVTDSATNLTASQGVATASQTGFLGQGQKNDYMQMQMQYEEGSGNTRFLGANTMKEMLSSKMPRQHFAMPAEV 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30449g00002 432 Pfam Myb-like DNA-binding domain 113 157 IPR001005 -
Stsc30449g00002 432 Pfam Myb-like DNA-binding domain 61 107 IPR001005 -
Stsc30449g00002 432 SUPERFAMILY Homeodomain-like 58 154 IPR009057 -
Stsc30449g00002 432 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 112 162 IPR017930 -
Stsc30449g00002 432 CDD SANT 63 105 IPR001005 -
Stsc30449g00002 432 ProSiteProfiles Myb-like domain profile. 108 158 IPR001005 -
Stsc30449g00002 432 SMART sant 112 160 IPR001005 -
Stsc30449g00002 432 SMART sant 60 109 IPR001005 -
Stsc30449g00002 432 FunFam MYB transcription factor 61 112 - -
Stsc30449g00002 432 MobiDBLite consensus disorder prediction 1 39 - -
Stsc30449g00002 432 CDD SANT 115 158 IPR001005 -
Stsc30449g00002 432 PANTHER MYB PROTEIN-RELATED 61 214 - -
Stsc30449g00002 432 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 111 IPR017930 -
Stsc30449g00002 432 Gene3D - 60 112 - -
Stsc30449g00002 432 ProSiteProfiles Myb-like domain profile. 56 107 IPR001005 -
Stsc30449g00002 432 Gene3D - 114 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30449g00002 Stsc-Chr30449 13627 17177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30449g00002 59 392 MYB Transcription Factor Family AT3G55730 47.839 3.67e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc30449g00002 Myb_DNA-binding 3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30449g00002 K09422 - gmx:100781228 520.39