Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30447g00002 ATGTCTGCAGAAAAGGGGTATGTAGGGCTGGGAGAGGTTGCTGCAATGGAAGATACCATTGGCTTGAACCTAAAAGCCACTGAGTTGAGGCTTGGCTTGCCTGGTTCAGAGTCACCGGTGAAGACTACTACTAGTTTGGGGGCAAAGAGGGGTTTCTCAGACGCCATTGATGGGAACTGGGTTCTCTCTGGGAATGGGAATGGCAACCAAAGTGGATCTGACTTGGCTTTGGGTAAAGATGCTTCCTTGTTCTCTTCTCCCTCTGACAAAACCAACAAAGACACTCTTCCACTTCCACAACCTTCAAAGCCTGTTCCTGCTGCAAAGGCACAAGTTGTTGGATGGCCACCAATCCGTTCATTCAGGAAGAATTCAATGGCTACTCAGCCTCCTCAAAAGAATGAAGCTGATGCAGAACCCAAACCTGGATGCCTTTATGTCAAAGTCAGCATGGATGGCGCCCCATACTTAAGGAAAATGGATCTCAACAATTATGCTTCCTATAGGGACCTCTCTTCAGCACTCGAAAAGATGTTTAGCTGTTTTACTCTCAGTCAATGCGGCTCTCATGGGGTTTCAAGCCGAGATAACTCAAACGAAAGCAAATTGAGGGATCTCTTGCATGGCTCAGAGTACGTGCTCACCTACGAAGACAAGGATGGCGATTGGATGCTCGTCGGTGATGTTCCTTGGGAGATGTTCACTGACTCTTGCAAGAGGTTGAGGATAATGAAGAGTTCCGAAGCAATTGGGTTAGCACCTAGAGCCATGGAAAAGTGCAGAAGTCGCAATTAG 795 0.4755 MSAEKGYVGLGEVAAMEDTIGLNLKATELRLGLPGSESPVKTTTSLGAKRGFSDAIDGNWVLSGNGNGNQSGSDLALGKDASLFSSPSDKTNKDTLPLPQPSKPVPAAKAQVVGWPPIRSFRKNSMATQPPQKNEADAEPKPGCLYVKVSMDGAPYLRKMDLNNYASYRDLSSALEKMFSCFTLSQCGSHGVSSRDNSNESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLAPRAMEKCRSRN 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30447g00002 264 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 22 251 IPR003311 GO:0005634|GO:0006355
Stsc30447g00002 264 Pfam AUX/IAA family 27 255 IPR033389 -
Stsc30447g00002 264 Gene3D - 139 257 - -
Stsc30447g00002 264 ProSiteProfiles PB1 domain profile. 144 246 IPR000270 GO:0005515
Stsc30447g00002 264 MobiDBLite consensus disorder prediction 65 110 - -
Stsc30447g00002 264 FunFam Auxin-responsive protein 139 256 - -
Stsc30447g00002 264 SUPERFAMILY CAD & PB1 domains 140 245 - -
Stsc30447g00002 264 MobiDBLite consensus disorder prediction 84 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30447g00002 Stsc-Chr30447 36888 39272 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30447g00002 148 254 B3 DNA Binding Superfamily AT4G23980 30.841 1.84e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc30447g00002 AUX_IAA 8.6e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30447g00002 K14484 - gmx:100803754 344.354