Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30444g00001 ATGGGAAGGCAACCATGTTGTGACAAAGTTGGGTTGAAGAAGGGGCCATGGACAGCAGAAGAGGATAAGAAGCTCATAAGCTTCCTCCTCACTAATGGCCAATGTTGTTGGAGAGCTGTGCCTAAGCTTGCAGGGCTATTAAGGTGTGGGAAGAGTTGCAGGCTTAGGTGGACAAATTATCTTAGGCCAGATTTAAAGAGAGGCCTTCTCTCAGAGTATGAGGAGAAAATGGTCATTGACCTTCATGCTCAACTTGGGAACAGATGGTCTAAGATTGCTTCTCATTTGCCAGGAAGGACAGATAATGAAATAAAAAATCATTGGAACACTCACATTAAAAAAAAGCTCAAGAAAATGGGCATAGACCCTATTACTCACAAGCCACTCTCTAATAATCACCCCATCCAAATTCAAGTCCAAAACCAAAACCAACCATTTTTAGAACAACAAGAACAGAGCAACCAATCACCTAAGAATGTTGACTTTGATGACCAAAACAAAGAGAAAGAGAAAGAAAAATCAGATACTTCATCATTTGATTCATCATCAACAACTATAGCTACTGAGTCCAAACAAGAAGGAAAAGAAGAAGAGAAAATCGTTATGATGATGCCACCACCCTTAATTGATGACACAATAATAATGGAGAATGAGATGATAATAATGAATAATAATAATGGGTTCTGCACGGACGAAGTACCAATAATAGAACCACATGAGATTCTTGTTCCTTGTTCTGAAAATTCCCCTTCATCAATATCTACCTCGTCTTCTTCCTCCTTTTCTTCCTCTTCCTTTAATTCAAATAACAACTTCCTTAAAGACCTTCAGCTCCCAGATTTTGAATGGTCATGTAACAATGATCAAAATGGTATTATTATTAACAACGACATTGATGACAACAACAAGAATGTGACTTTGTGGGATGATGATGATTTTATTAATTGCTTGAATTCGTTGATAAATGATGATGATGATAACGGTGATTATGGTGAAAATGATGAAAGTAGTAAGCAGCAACAAGTGTTTGATAATGCTCCTTCTCCATTTTGTCAGTACTCAAAAATGGTCATGGATTATTCAGAATGTTCTTGGCCATATGACTTCTCTTGA 1113 0.3738 MGRQPCCDKVGLKKGPWTAEEDKKLISFLLTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPITHKPLSNNHPIQIQVQNQNQPFLEQQEQSNQSPKNVDFDDQNKEKEKEKSDTSSFDSSSTTIATESKQEGKEEEKIVMMMPPPLIDDTIIMENEMIIMNNNNGFCTDEVPIIEPHEILVPCSENSPSSISTSSSSSFSSSSFNSNNNFLKDLQLPDFEWSCNNDQNGIIINNDIDDNNKNVTLWDDDDFINCLNSLINDDDDNGDYGENDESSKQQQVFDNAPSPFCQYSKMVMDYSECSWPYDFS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30444g00001 370 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc30444g00001 370 SMART sant 13 63 IPR001005 -
Stsc30444g00001 370 SMART sant 66 114 IPR001005 -
Stsc30444g00001 370 FunFam MYB-related transcription factor 70 130 - -
Stsc30444g00001 370 CDD SANT 16 61 IPR001005 -
Stsc30444g00001 370 Gene3D - 11 67 - -
Stsc30444g00001 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc30444g00001 370 MobiDBLite consensus disorder prediction 161 177 - -
Stsc30444g00001 370 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc30444g00001 370 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Stsc30444g00001 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc30444g00001 370 Gene3D - 71 116 - -
Stsc30444g00001 370 PANTHER F14D16.11-RELATED 1 343 - -
Stsc30444g00001 370 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc30444g00001 370 CDD SANT 74 112 IPR001005 -
Stsc30444g00001 370 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc30444g00001 370 FunFam MYB transcription factor 11 67 - -
Stsc30444g00001 370 MobiDBLite consensus disorder prediction 147 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30444g00001 Stsc-Chr30444 2064 5516 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30444g00001 1 324 MYB Transcription Factor Family AT1G66230 52.266 1.63e-94 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc30444g00001 Myb_DNA-binding 2.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30444g00001 K09422 - gmx:100792103 380.563