Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30443g00005 ATGGCACAGCAGAATTATTCAGGAAACTCAATACTACCTTGCAACAGCAACGACACAAAGGGTCCTTCTCCAGATTTCTTATACACCTGCAATGGATTCCAAAAATCCTGCTTAGCCTTCCTCATATTCAAATCCCAAACTCCACACAACACCATTGCCACAATCTCCAACCTCACTTCCTCAAACCCAAAGGACCTTGCAAGGCTCAACAAGGCCACTAGTTCCACTGTGTTCCCAACCGGCAAAGAAGTCATTGTCCCTGTCAACTGTTCTTGTCCAACCAAAGAACATGGTGGTGGTGGTTATGATGAGTACTATCAAGCCTTTACCAGATACATTCTTCCACAACATCCAACATATTTCATAACAGCAAATGATACTTATCAAGGGTTGACCACTTGTGATGCTCTCAAGCGTTATAATCCCTATGGGGTTCTTGATTTACATCCTGGCATGGTGCTGCACGTGCCTCTCAGATGCGCTTGTCCGACGGCGCGTCAAGCCGGCACCGGCACCAAGTATTTGCTTACCTACTCAGTTTTTTGGGGTGATAACATCACAAATATGGCCACACGGTTCCATGTCACAGCAAGTAGTATAGTTGATGCAAATGGTTTCTCCTCAGAAGATGAAGTTCTGTATCCCTTCACAACTGTGCTGATTCCATTAACAAGTGAACCCAACAGCTCAATAACCAAAGTTCGAAATGGTCAAGGTCAACCATCTTCTCCACCTACTCTTTACACAAAGGATAAGACGAAGTCAAACAGAAAAAGAATCGTAATTGCTCTTACTTCCTCTGCAAGCTTCTTGGTTGTTGTGTTTGTCATTTTATCTCTGGTGTTTGTGCTTAGAAAGAGATCAGCAAAGTTCTTCAGGGGAGAAAGAAAAGAGAAAACAAAGCAAGTTTTTTCAGAAAAAATACGTGAAGGGCTAGCAAGCATTGAGCTTCTCTCCAAAGTGTACAAGTTCGATGAAATTAAAGAAGCAACTGAGAATTTCAGTGCAAGCAACAGAATCAAAGGCTGTGTCTACCGTGGGGTATTTGGCAAGGAGAGGGAAATAGAAATCATGGCCATCAAGAAGATGAATTCGGATGCATCTAAGGAAGTGAATTTGTTAGGAAGGATCAATCACTTCAACCTGATAAAGCTGGAAGGTTACTGTGAAAAAGATGGATTCTTCTATCTTGTTTTTGAGTACATGGAGAATGGTTGTTTGAGAGAATGGCTTGGGAGAAGAAACAAAACCATAGAACACAGGAGTTGGACAAAGAGGATTCGGATTGCTGTGGATATTGCAAATGGACTTGAGTATCTTCATAACTTCACAGATCCTTGCTGTGTTCACAAGGCCATAAACACTGATAACATATTGCTGAACAAAGATCTAAGGGCCAAGATAGCTAACTTCACTCTTGCTAAAGAATCAGATAGAGAAGTAACAAGCTCTTGTTCTTATTACACATCAAATGTTGTGGGAACTAGAGGCTATATGGCTCCGGAGTATCTTGATTCAGGGAGAGTCACATCGAAAATGGATGTGTATGCGTTCGGAGTGGTGCTGTTGGAATTAATCACTGGTAAAGATTCTATTATTGTGCAGGATGATGGAAGTCAGATGATGCTTTCATCAATCATATTGAATCTCATTGAAAGAGATGATGCAGAAGAGAAACTCGGTTTGTTCATTGATCCTAGTCTCGTGGGGAACAATGAGAAAGTGTATGCAATTCAGCTAGTTAAGCTAAGCCTAGCATGCTTGGTTGCAGAACCTTCAAGAAGGCCTAACATGGCTGAAGTGGTCTCGAGTTTGCTTAAAATATATGCAGAAATGGAGCCAAGGGTATCACCCTGCAGAAGCAATGACAGTGGAAGCATGGAGAGGAGAAATCATACAGAATAG 1905 0.4184 MAQQNYSGNSILPCNSNDTKGPSPDFLYTCNGFQKSCLAFLIFKSQTPHNTIATISNLTSSNPKDLARLNKATSSTVFPTGKEVIVPVNCSCPTKEHGGGGYDEYYQAFTRYILPQHPTYFITANDTYQGLTTCDALKRYNPYGVLDLHPGMVLHVPLRCACPTARQAGTGTKYLLTYSVFWGDNITNMATRFHVTASSIVDANGFSSEDEVLYPFTTVLIPLTSEPNSSITKVRNGQGQPSSPPTLYTKDKTKSNRKRIVIALTSSASFLVVVFVILSLVFVLRKRSAKFFRGERKEKTKQVFSEKIREGLASIELLSKVYKFDEIKEATENFSASNRIKGCVYRGVFGKEREIEIMAIKKMNSDASKEVNLLGRINHFNLIKLEGYCEKDGFFYLVFEYMENGCLREWLGRRNKTIEHRSWTKRIRIAVDIANGLEYLHNFTDPCCVHKAINTDNILLNKDLRAKIANFTLAKESDREVTSSCSYYTSNVVGTRGYMAPEYLDSGRVTSKMDVYAFGVVLLELITGKDSIIVQDDGSQMMLSSIILNLIERDDAEEKLGLFIDPSLVGNNEKVYAIQLVKLSLACLVAEPSRRPNMAEVVSSLLKIYAEMEPRVSPCRSNDSGSMERRNHTE 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30443g00005 634 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 2 612 - -
Stsc30443g00005 634 SUPERFAMILY Protein kinase-like (PK-like) 324 616 IPR011009 -
Stsc30443g00005 634 FunFam PTI1-like tyrosine-protein kinase 3 402 617 - -
Stsc30443g00005 634 Gene3D Transferase(Phosphotransferase) domain 1 402 625 - -
Stsc30443g00005 634 Gene3D Phosphorylase Kinase; domain 1 308 401 - -
Stsc30443g00005 634 Gene3D LysM domain 176 233 IPR036779 -
Stsc30443g00005 634 ProSiteProfiles Protein kinase domain profile. 330 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30443g00005 634 ProSiteProfiles LysM domain profile. 176 221 IPR018392 -
Stsc30443g00005 634 MobiDBLite consensus disorder prediction 228 250 - -
Stsc30443g00005 634 Pfam LysM domain 183 222 IPR018392 -
Stsc30443g00005 634 Pfam Protein kinase domain 356 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30443g00005 Stsc-Chr30443 21540 23634 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30443g00005 2 613 Receptor kinase-like Gene Family AT2G23770 37.460 1.23e-118 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc30443g00005 Pkinase 1.4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30443g00005 - - gmx:100806221 750.74