Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30443g00002 ATGGCAAGTGGGTTTGGGGAATCAACGAGCAAGTCACCCCCAAGCCCTTCGTATTCGAGCAACGGTAATAGCAACAATGAGGCTGGCGATTTTGAATGCAACATATGCTTTGATTTAGCACAAGATCCTATTATCACTTTGTGTGGTCACCTCTTCTGCTGGCCATGCCTCTACAAGTGGCTTCACCTCCACTCGCAGTCGCAAGAATGCCCGGTCTGCAAGGCTCTCATTGAGGAGGAGAAGCTGGTTCCGTTGTATGGGAGAGGAAAGACATCAACTGATCCAAGATCGAAAGCTATTCCGGGTGTTAATATCCCTCATCGTCCTACCGGTCAGAGGCCTGAAACTGCGGCTCCTCCTCCCGAAGCAAACCATTTTCATCAACATGGGTTTGGTCTAATGGGTGGATTGGGAGGCTTTGCACCAATGGCAACTGCGAGATTTGGGAATTTCACCTTGTCTGCAGCATTTGGTGGTTTTATACCGTCGCTATTCAACTTTCAATTGCATGGATATCATAACGGGTCCATGTATGGTGGAGCAGCTGGTTATCCTTATGGATACTCTAATTCATTTCATGGCGTCCATGCTCATAGATATCCTCTGCATGCTGGTCAAGGGCAACAAGATTATTACCTGAAGAGGCTCCTTCTGTTTGTCGTCTTCTTTGTTGTTCTTGCTTTTATCTGGCAATAG 696 0.4713 MASGFGESTSKSPPSPSYSSNGNSNNEAGDFECNICFDLAQDPIITLCGHLFCWPCLYKWLHLHSQSQECPVCKALIEEEKLVPLYGRGKTSTDPRSKAIPGVNIPHRPTGQRPETAAPPPEANHFHQHGFGLMGGLGGFAPMATARFGNFTLSAAFGGFIPSLFNFQLHGYHNGSMYGGAAGYPYGYSNSFHGVHAHRYPLHAGQGQQDYYLKRLLLFVVFFVVLAFIWQ 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30443g00002 231 SMART ring_2 33 73 IPR001841 -
Stsc30443g00002 231 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 87 - -
Stsc30443g00002 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 87 IPR013083 -
Stsc30443g00002 231 ProSiteProfiles Zinc finger RING-type profile. 33 74 IPR001841 -
Stsc30443g00002 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 17 226 IPR045103 GO:0005783|GO:0006511|GO:0061630
Stsc30443g00002 231 MobiDBLite consensus disorder prediction 1 23 - -
Stsc30443g00002 231 ProSitePatterns Zinc finger RING-type signature. 48 57 IPR017907 -
Stsc30443g00002 231 MobiDBLite consensus disorder prediction 87 120 - -
Stsc30443g00002 231 Pfam Zinc finger, C3HC4 type (RING finger) 31 78 - -
Stsc30443g00002 231 SUPERFAMILY RING/U-box 29 86 - -
Stsc30443g00002 231 CDD RING-HC_AtRMA-like 31 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30443g00002 Stsc-Chr30443 10576 11777 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30443g00002 21 230 C3H Transcription Factor Family AT2G23780 59.259 3.03e-88 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30443g00002 K10666 - gmx:100527488 349.362