Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30442g00006 ATGGACACAGAAACCCCGCTCTTCTCCCAGTCTACTATATTCGCCGCCTTTGCACTTCTTCTCTTCCTTTATGTACTTGTTACTTCCATCTCAAGAAGGCGAACTGGTGACATCGAAGCAAAGAAAGCGCCGCCAGAAGCCAGTGGCGCGTTGCCGTTGATAGGTCACCTCCACCTTCTTGGCGGAGCAAAGCCACCTCATCTAACGTTGGGCGAGATGGCGGACAAGTACGGACCGGTGTTCACGATAAGACTCGGTGTTCATAAGACTCTGGTGATTAGCAACAGCGAGATGGCGAAGGAGTGCTTCACGGTAAACGACAGGGCGTTTGCTAGTCGCCCCAAATCCGTGTCGTTTGAGGTGTTGGGTTATAACTTCTCCATGATTGGGTTCAGTCCCTACGGGCCTTATTGGCGCCACGTGCGCAAGTTAGCTACCTTAGAGGTGCTTTCAACGCACCGGATTCAGATGCTGAACCATGTTATGGAGTCAGAGGTGAAGACTGCGATCAAAGATAGTTATGCTTTGTGGGTAAGCATCAAAGAGAGTCGAAGCGGTGAAAGACAGCAGGTCACCGAGATGCAGAAATGGTTTGGAGACATAACTCTAAATGTTTTGTTCAGAACGGTAGTCGGAAAACGTTTTGGCGGTGGCAACAGTGATGGTGGTAATAGCGAAGAGAACCAACGGATCCGGAAAGCACTTCGAGAGCTTTTCGATCTTAGTGGATCGTTCGTGGTTTCAGATGCATTGCCGTTTTTGAGATGGTTAGATTTGGATGGAAAAGAGAGAGCAATGAAGAGAACTATTAAAGAGTTGGATTACTTCGTTAGTATTTGGCTTGAAGAACACAAGCGCAAGAGGGATAAAAATGATCATCACGATGATTTCATGGACGTGCTTCTCTCCGTAGTTGATCAAGATTTTGATGGTCATGATGTTGATACTATAATTAAAGCTACAAGCTTGGCACTAATTTTAGCTGGCACAGACACTACAACCGGGACATTAACTTGGATTCTCTCGTTACTTCTCAACAACCGCAAAGCACTAAATAAAGCTATTGAGGAATTAAACACACAAATTGGGAGGGAAAAGACAGTAGTAGAGGAATCAGACTTGAAAAACTTGGTGTATCTCCAAGCCATTGTCAAAGAAACGCTGCGCTTATATCCAGCAGCACCACTTAGCGTGCCACACGAGTCCATGGAAGAATGCACCGTGGGTAGTTACAACATCAGTGCTGGCACCCGACTTTTCCCAAACCTATCGAAAATTCATCGTGATCCTGCACTCTACGATGATCCGTTGGAGTTTCGACCAGAGAGGTTTATCACAACACACAAAAACGTTGACTTGAGAGGGCAACATTTCGAGTTGATTCCGTTTGGTGCGGGGAGAAGAATTTGCCCTGGACTTTCATTTGGTCTTCAAATGGTGCAGCTAATACTTGCCAACTTATTGCATAGTTTTGAGATAGTAACAGCTGACGGAAAGCCAGTTGATATGGTTGAACAAGTTGGATTAACCAACATTAAAGCCTCTCCGCTTCATGTCATTCTTACTCCACGTTTCCCTCCCCGAATCATTGTTAAAAATTAG 1602 0.4557 MDTETPLFSQSTIFAAFALLLFLYVLVTSISRRRTGDIEAKKAPPEASGALPLIGHLHLLGGAKPPHLTLGEMADKYGPVFTIRLGVHKTLVISNSEMAKECFTVNDRAFASRPKSVSFEVLGYNFSMIGFSPYGPYWRHVRKLATLEVLSTHRIQMLNHVMESEVKTAIKDSYALWVSIKESRSGERQQVTEMQKWFGDITLNVLFRTVVGKRFGGGNSDGGNSEENQRIRKALRELFDLSGSFVVSDALPFLRWLDLDGKERAMKRTIKELDYFVSIWLEEHKRKRDKNDHHDDFMDVLLSVVDQDFDGHDVDTIIKATSLALILAGTDTTTGTLTWILSLLLNNRKALNKAIEELNTQIGREKTVVEESDLKNLVYLQAIVKETLRLYPAAPLSVPHESMEECTVGSYNISAGTRLFPNLSKIHRDPALYDDPLEFRPERFITTHKNVDLRGQHFELIPFGAGRRICPGLSFGLQMVQLILANLLHSFEIVTADGKPVDMVEQVGLTNIKASPLHVILTPRFPPRIIVKN 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30442g00006 533 CDD CYP82 78 524 - -
Stsc30442g00006 533 SUPERFAMILY Cytochrome P450 49 524 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30442g00006 533 PRINTS P450 superfamily signature 328 345 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30442g00006 533 PRINTS P450 superfamily signature 382 393 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30442g00006 533 PRINTS P450 superfamily signature 461 470 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30442g00006 533 Pfam Cytochrome P450 47 508 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30442g00006 533 Coils Coil 341 361 - -
Stsc30442g00006 533 FunFam Cytochrome P450 82C4 34 522 - -
Stsc30442g00006 533 PRINTS E-class P450 group I signature 74 93 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30442g00006 533 PRINTS E-class P450 group I signature 381 399 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30442g00006 533 PRINTS E-class P450 group I signature 317 334 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30442g00006 533 PRINTS E-class P450 group I signature 470 493 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30442g00006 533 PRINTS E-class P450 group I signature 337 363 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30442g00006 533 PRINTS E-class P450 group I signature 201 219 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30442g00006 533 PRINTS E-class P450 group I signature 460 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30442g00006 533 PRINTS E-class P450 group I signature 98 119 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30442g00006 533 PRINTS E-class P450 group I signature 422 446 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30442g00006 533 PANTHER CYTOCHROME P450 82C3-RELATED 22 527 - -
Stsc30442g00006 533 Gene3D Cytochrome P450 38 527 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc30442g00006 533 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 463 472 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30442g00006 Stsc-Chr30442 35134 42309 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30442g00006 45 531 Cytochrome P450 AT4G31940 49.095 3.27e-172 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30442g00006 - - gmx:100787630 662.914