Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30442g00003 ATGTTCAACAGACATGGAAGTTCTGTGGAAGAATTCAAAATGTATGTGATGAGCAAGTTCATAATTGTAGACAAGAAACTGAAAACAAGGGCAGCAGAAAACAACTGGACACTTACATTTTCACACATGACTATTGTGGAGCCAGTTGCAGAACCTTCTTTTCCCCTTGAGCCGTTTTGGTTTCACAACATAGCTGAGCTACTAACGGCTGATGTGATTGATGGCTCACAACTGATTGAGATTATTGCTGAGGTTGTTGGAAAGGAAGAACCAAGAGAGCTGACAACCGTGGGTGGACGCGATACCAAACGTTTGGCTTTGAAGATACAAGATCTTGAGAAAAACACAATTGAAGCTGTGTTGTTTGGAGGCTTGGTGGACCAGATTCAGCCGCACATGGATGATGGCCGGGTTGAGCCATTGATTGTTGTTCTGCAATTTTTCAGACCCAACAGATGGAAAGGTAAAACCTCTGTCCAAAGCCACTTCGAGACATCCAGGTTGCTCATTGACCCCAACTTGTCTGATGTTAAAGAATTCCGGACAAGGCTACTAGGTGACCAACCATGTGGCTCGGTTAGGATAACCCAGGTATCAAGCCAAGGTGGATCTACTGGAATTGCAGAGCTGAGGAGGGGGACAGCTGAAGTTAAGACTATTGAGCAAGTCATGGTGCTTGGGGAGGAGGGACAAGTTTGGATAGCTGGTCATATAGAGTCTATAAATGCTGGTATGAACGACTGGTCTTACCCAGCATGCAATGATTGCCTAAAAAAGGTCGAACAAGGGGAGGACGGGAGGTATACCTGCAAGAAACACGAGGACACTACTAATTTGGAGTTAAAGTACAAGGTTGAGGTAATGGTGTGTGATGGTACCAGGGGTATCTCTTTGCTGATGTGGGATACCCAGATAATCCACCTTTGTAGCAAGAGTGCTGATGATGTCAAGATGGAAGCGGTAATAACAAAAAATCACTACTTTAGGTGTAGGGTTATATTTGGTCCCCAAACCTAA 1017 0.4454 MFNRHGSSVEEFKMYVMSKFIIVDKKLKTRAAENNWTLTFSHMTIVEPVAEPSFPLEPFWFHNIAELLTADVIDGSQLIEIIAEVVGKEEPRELTTVGGRDTKRLALKIQDLEKNTIEAVLFGGLVDQIQPHMDDGRVEPLIVVLQFFRPNRWKGKTSVQSHFETSRLLIDPNLSDVKEFRTRLLGDQPCGSVRITQVSSQGGSTGIAELRRGTAEVKTIEQVMVLGEEGQVWIAGHIESINAGMNDWSYPACNDCLKKVEQGEDGRYTCKKHEDTTNLELKYKVEVMVCDGTRGISLLMWDTQIIHLCSKSADDVKMEAVITKNHYFRCRVIFGPQT 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30442g00003 338 Gene3D - 197 334 IPR012340 -
Stsc30442g00003 338 SUPERFAMILY Nucleic acid-binding proteins 216 332 IPR012340 -
Stsc30442g00003 338 Gene3D - 53 188 IPR012340 -
Stsc30442g00003 338 SUPERFAMILY Nucleic acid-binding proteins 61 183 IPR012340 -
Stsc30442g00003 338 Pfam Replication factor-A C terminal domain 246 318 IPR013955 -
Stsc30442g00003 338 CDD RPA1_DBD_B_like 93 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30442g00003 Stsc-Chr30442 15199 17027 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30442g00003 14 293 Core DNA Replication Machinery Family AT4G19130 19.728 1.06e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30442g00003 - - aip:107635329 330.102