Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30441g00008 ATGTCGGCTTCATCCACAAGTTCGTTTTCACCGGACCAGCTGCAGCAGCACCAACAACAACTCTCTTCTTCTTCTTCTAACACCGACCAGCTTTGTTATGTCCATTGTAACTTCTGTGACACTGTCCTCGCTGTGAGTGTTCCTTGCACGAGTTTGTTTAAAACAGTGACAGTGAGATGTGGGCATTGCACCAACCTTCTCAGTGTCAACATGCGTGGCCTTCTTCTTCCTTCTGCCAATCAGCTTCACCTTCCTCACTCCTTCTTCACTCCTCAAAATCTTTTGGAGGAGATTCGAAATGCACCATCATCAAACATGATGATGATGAATCATCAGCTTCCAAACCCAAATGATTTGATGATGAGCAACATTAGAGGAGGATCAATAGATCAAGAAACTCCTAAGCCTACTCCTCCTGCTGCTAGACCTCCAGAGAAGAGACAGAGAGTTCCATCTGCCTACAACCGCTTCATCAAGGATGAGATCCAACGTATCAAGGCTGGGAATCCTGATATAAGTCATAGAGAAGCCTTCAGTGCTGCTGCAAAGAATTGGGCCCATTTTCCACACATTCATTTCGGACTTATGCCTGATCATCAACCCGTGAAGAAAGCTAATGTTCGCCAGGAAGCTGAGGACGTGCTTATGAAAGATGGGTTTTTCACACCAGCAAAT 675 0.4548 MSASSTSSFSPDQLQQHQQQLSSSSSNTDQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPSANQLHLPHSFFTPQNLLEEIRNAPSSNMMMMNHQLPNPNDLMMSNIRGGSIDQETPKPTPPAARPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANVRQEAEDVLMKDGFFTPAN 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30441g00008 225 MobiDBLite consensus disorder prediction 1 21 - -
Stsc30441g00008 225 Pfam YABBY protein 27 195 IPR006780 GO:0007275
Stsc30441g00008 225 CDD HMG-box_SF 149 185 - -
Stsc30441g00008 225 Gene3D High mobility group box domain 129 214 IPR036910 -
Stsc30441g00008 225 MobiDBLite consensus disorder prediction 117 151 - -
Stsc30441g00008 225 FunFam Axial regulator YABBY 140 212 - -
Stsc30441g00008 225 SUPERFAMILY HMG-box 133 189 IPR036910 -
Stsc30441g00008 225 PANTHER PROTEIN YABBY 6-RELATED 22 207 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30441g00008 Stsc-Chr30441 61567 65266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30441g00008 38 224 C2C2-YABBY Transcription Factor Family AT4G00180 63.054 2.14e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Stsc30441g00008 YABBY 1.7e-73 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30441g00008 K25796 - gmx:100781267 364.385