Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30441g00004 ATGAGATTCAAGCTTGGGAAGCGTGTATTTCGGGTCACCCGATGGGTCTTTAGACGGATCAGGATCCGACCCAGGTACCAACGGTTAGGAGAGTCATCAGGAAAACCCATGTCAAAGCTTCTCAATTGGGGGCGAAAGTTGACCAATGGGGCAAAGTCATTGTGTTACTCCGCGAAACACGGGTCGGGTTATAAACGGGTTGGAACCGACCCAACTCCTTCGGTGCCTAAGGGCTACTTGGCTGTGTATGTAGGCCAAAAGGAGGGCGGTGAGTTCCGGCGTGTGCTTGTGCCGGTGGTGTACTTCAACCATCCTTTGTTCGGAGAGTTGCTCCGGGAGGCCGAGGCAGAGTTCGGATACCACCACCCGGGCGGGATCACGATACCTTGTCGGGTAACCGAGTTTGAACAAGTCAAGACCCGAATTGCATCCGGGTCAGGTAGCAAGAGGCTGATGTGGCTGCGGCATCATCAATGA 477 0.543 MRFKLGKRVFRVTRWVFRRIRIRPRYQRLGESSGKPMSKLLNWGRKLTNGAKSLCYSAKHGSGYKRVGTDPTPSVPKGYLAVYVGQKEGGEFRRVLVPVVYFNHPLFGELLREAEAEFGYHHPGGITIPCRVTEFEQVKTRIASGSGSKRLMWLRHHQ 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30441g00004 158 Pfam Auxin responsive protein 59 139 IPR003676 GO:0009733
Stsc30441g00004 158 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 55 137 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30441g00004 Stsc-Chr30441 18470 18946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30441g00004 70 135 Calmodulin-binding Proteins AT3G43120 51.515 3.14e-18 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30441g00004 K14488 - csav:115707646 186.808