Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30441g00001 ATGGCAACATTTAAGTTGCTATTAGCAACACTTTTAATTAGTGTACCTTTTCTATTTTCTTCCGTTGCAAATGGCTACTCAACTAAAGAAATAAAATCATGGTGTAGCCAAACACCTTTCCCTCAACCATGTGAGTACTATTTGAGCAACCATGCATTCAACAAACCCATAAAGAACAAATCAGATTTCCTCAAAGTGTCACTACAAGTAGCCTTAGATAGAGCACAAAGTGGGCATGAACACACAATCACACTTGGCCCAAAGTGTAGAAATTCACATGAGAAAGCTGCTTGGGATGATTGTGTTAAACTCTATCAATACACAATCAACAAGCTCAACAAAACCATGGATCCAAAATCAAAGTGTAGCCAAGTTGATGCACAAACTTGGCTAAGCACTGCCCTAACAAACCTTGAGACATGCAAGCTTGGTTTCTATGACCTAGGAGTCCAAGATTACTTGCTCCCATTGTTGTCCAACTACAATGTTTCTTGCTTGATAAGCAACACACTATCATTGAACAAGGTGGCTTTTCAGCCACCCAGTTACAAAGATGGTTTCCCATCATGGGTCAAGCCCGGGGATAGGAAACTTTTGCAGTCGTCTACGGCGGCTTCTAAGGCTAATGTGGTGGTGGCCAAAGATGGGTCTGGAAAATATACCACTGTTAGCGCCGCCGTAAACGCTGCACCAAGTGGTAGCAGTAGGTATGTGATATATGTTAAGGCTGGTGTTTACAACGAACAAGTTCAGATCAAAGGATCGAACATCATGTTGGTCGGAGATGGTATCGGAAAAACCGTTATCACCGGTAGCAAAAGTGTTGGAGGAGGAAGCACAACCTTCAACTCCGCCACTGTTGCCGTTACCGGAGATGGATTCATTGCTCAAGATATCACATTCAGAAATACTGCTGGAGCAGCAAATCACCAAGCCGTGGCACTACGTTCTGGATCAGATCTCTCAGTATTCTACAGATGTGGATTTGAAGGTTTTCAAGACACATTATATGTTTATTCCGACAGACAATTTTACAGAGAATGTGACATTTATGGAACCGTCGACTTTATCTTCGGAAACGCCGCAACGGTTTTGCAAAACTGTAACATATACGCAAGAAACGCTCCTCAAAACACAGTTACAGTAACAGCTCAAGGCCGAACCGATCCAAACCAAAACACCGGAATCATCATCCACAACTCAAAGATTGTAGCTGCCTCAGGCTTAAGTAGCTCAGTGAAATCATACCTTGGGAGGCCATGGAAGCAATACTCAAGAACCGTGGTGATGAAGACATATCTTGATAGCTTGATTAACCCAGCAGGGTGGTTACCATGGAGTGGTAACTTTGCATTGAACACTTTGTATTATGCTGAGTATGCAAACACAGGTCCTGGTTCATCAACTTCAAATAGGGTTACATGGAAGGGTTACCATGTTCTTACTAGTGCTTCTCAAGCTACACCTTTCACTGTTGGAAACTTCATTGCTGGGAATTCATGGTTGCCAAGCACTGGGGTCCCTTTCACCTCTGGTCTCTAA 1542 0.4293 MATFKLLLATLLISVPFLFSSVANGYSTKEIKSWCSQTPFPQPCEYYLSNHAFNKPIKNKSDFLKVSLQVALDRAQSGHEHTITLGPKCRNSHEKAAWDDCVKLYQYTINKLNKTMDPKSKCSQVDAQTWLSTALTNLETCKLGFYDLGVQDYLLPLLSNYNVSCLISNTLSLNKVAFQPPSYKDGFPSWVKPGDRKLLQSSTAASKANVVVAKDGSGKYTTVSAAVNAAPSGSSRYVIYVKAGVYNEQVQIKGSNIMLVGDGIGKTVITGSKSVGGGSTTFNSATVAVTGDGFIAQDITFRNTAGAANHQAVALRSGSDLSVFYRCGFEGFQDTLYVYSDRQFYRECDIYGTVDFIFGNAATVLQNCNIYARNAPQNTVTVTAQGRTDPNQNTGIIIHNSKIVAASGLSSSVKSYLGRPWKQYSRTVVMKTYLDSLINPAGWLPWSGNFALNTLYYAEYANTGPGSSTSNRVTWKGYHVLTSASQATPFTVGNFIAGNSWLPSTGVPFTSGL 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30441g00001 513 Pfam Plant invertase/pectin methylesterase inhibitor 30 173 IPR006501 GO:0004857
Stsc30441g00001 513 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 176 IPR035513 -
Stsc30441g00001 513 CDD PMEI-like_3 33 175 - -
Stsc30441g00001 513 FunFam Pectinesterase 203 513 - -
Stsc30441g00001 513 ProSitePatterns Pectinesterase signature 1. 233 252 IPR018040 -
Stsc30441g00001 513 PANTHER PECTINESTERASE 15 503 - -
Stsc30441g00001 513 SMART PMEI_2 26 173 IPR006501 GO:0004857
Stsc30441g00001 513 Pfam Pectinesterase 209 499 IPR000070 GO:0030599|GO:0042545
Stsc30441g00001 513 Gene3D - 203 513 IPR012334 -
Stsc30441g00001 513 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 176 IPR035513 -
Stsc30441g00001 513 ProSitePatterns Pectinesterase signature 2. 350 359 IPR033131 -
Stsc30441g00001 513 NCBIfam pectinesterase inhibitor domain 4 176 IPR006501 GO:0004857
Stsc30441g00001 513 SUPERFAMILY Pectin lyase-like 203 512 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30441g00001 Stsc-Chr30441 2580 6280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30441g00001 1 513 Carbohydrate Esterase AT2G45220 66.538 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30441g00001 K01051 - gmx:100794948 845.499