Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30439g00005 ATGGCTGAGGAGGGTTTTGAGGGTTATCATGTCCCACAACAAAGTAGAAGAGATAAGCTTAGAGTAGTTGTGGCTCACAACCAACATCAACAACAACAAAATCTTGTTGAATCTTCTTCCACTCCTACAACTACTACTAATAATTCTACTCTTACTTGGTATGATCCTTCTTCACTCCTTCCCTCTGATTTATTAGCAGCAGCAACACATCAAGGTCATCACGGTAATTTCCACCACAACAACGAAACTGCAGTGAAGAAAGAGGAACATCAACGTTCCAGTTTCATGATGGGGTTCGGTGTAGTAACCGCCATCAATAACAACGCTTCTTCCTCCTCTTCTTCTCCTTCTTCTTACATGGATCCACAATCTTCTTCTTCTTTGCATTTGAATAACCCCTCAATTCACGTTTTCGGCAACAACAACAACAACAACAACCCTTCGTTTCTCTACCAGCCGCAGAATCTCAGAGATTTCGACAATCATAGCGGTTACGGCGGCGGTGGTGGCGGTGAAATCATGGTGTTCAAGCCTGAACCGTTATCTTTATCTCTCTCTTCACACCACAATAACCATGGAAGTAACAATAACAATCATAACAGTAACAACAGCAACAACAATGGTAATAATCTTCCTCTAGAACTGAATCTTCAGCGGTACGGGGCTATGCTTTGCGGCGGTGGCGGTGTGATTCCGGGGTTGGTGGTTGGAGGAGGAGGGAATAATAACAACAGTAGCGGTGGAGGTTCTGGTTGTTCGAACGAAGCTTCTAGAAGCTGTTCGTCGGTAATAGTGCCGCAAATGATGGGTCCGTTTACGGGTTACGCTTCGGTGTTGAAGGGATCCAGGTTCTTGAAACCGGCGCAGCAGTTGCTGGAGGAGTTGTGTGATGTTGGTGGTGGTGGTGGTGTTGATGCTGAAGATAAGATCATTGTTGCTGATGCTTCGTTAATGGAACCTACTACTACTACTACGCCATTAATGGAGTGCTTGAATCATCATGAAGATCCATTGCTTGCAGATCATGGTGCTGCTGCTGTTGAGAGTCGCAAGAAGTCGAGGCTCTTAACCATGCTTGATGAGGTTTATAGGAGGTACAGGCAATATTATCAGCAGATGCAGGCGGTGGTAACATCGTTCGAGTATGTCTCGGGCCTCACGAACGCAGCTCCATACGCGAGTTTGGCCATGAAGACAATGTCCAAACACTTTAGATGTTTGAAGAATGCAATTACTGACCAACTCCAGTTCAACAATAAGACTCATGTTCAACTAAGCAACAGGAGAGACGATTCTCCGAGATTCGGCAACAGCGATCGCGGCCCTTACGGCCAAAGGACAGGGTTTATTGAGCACCAACCTGTTTGGCGACCTCAAAGAGGCCTCCCTGAGCGAGCCGTGACGGTTCTCAGGGCATGGCTATTCGAGCACTTTCTGCACCCTTATCCGACCGATACGGACAAGCTAATGTTGGCTAAACAAACCGGATTATCTCGAAGCCAGGTGTCTAATTGGTTTATTAATGCAAGAGTAAGGCTTTGGAAACCAATGGTGGAAGAAATACACATGCTAGAAACCCGGCAAGCTCAGAAAAATACCCAAAGGGAAGAACATAGTAGGAACAAAACGAGTGATCACTTGCCTTCGGATAACACTCTTGTTTCCGAGAATCCGTCGACCTCTGCTGCTGATAAATTCCAGGATGCACCTTACAAGCAAGCTATGAATGAGCTTCCGAGCATGCCGATTAGGACTCAAGAACAAGTGAATCTTGCCTGCGCGGGGAATCAGCAAGTTGGCATTGGAGTGAGCATGGGAAGTGCTAGCAATAGTGTGTCACTTACACTAGGCCTTCACCAAAATCATGGGATTGGTTTGGCCGAACCGTTTCCATTGAGTGCGGCTCGGCGCTTCGGTCTTGGCCTAGAAACCAACGGCGAAGGCTATGTCATGAGCGGTTTTGAATCGCAAAATCGCCATTTCGGAAGGGATGTTATTGGAGGGCAACTATTGCATGACTTTGTAGGATGA 2031 0.4653 MAEEGFEGYHVPQQSRRDKLRVVVAHNQHQQQQNLVESSSTPTTTTNNSTLTWYDPSSLLPSDLLAAATHQGHHGNFHHNNETAVKKEEHQRSSFMMGFGVVTAINNNASSSSSSPSSYMDPQSSSSLHLNNPSIHVFGNNNNNNNPSFLYQPQNLRDFDNHSGYGGGGGGEIMVFKPEPLSLSLSSHHNNHGSNNNNHNSNNSNNNGNNLPLELNLQRYGAMLCGGGGVIPGLVVGGGGNNNNSSGGGSGCSNEASRSCSSVIVPQMMGPFTGYASVLKGSRFLKPAQQLLEELCDVGGGGGVDAEDKIIVADASLMEPTTTTTPLMECLNHHEDPLLADHGAAAVESRKKSRLLTMLDEVYRRYRQYYQQMQAVVTSFEYVSGLTNAAPYASLAMKTMSKHFRCLKNAITDQLQFNNKTHVQLSNRRDDSPRFGNSDRGPYGQRTGFIEHQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQAQKNTQREEHSRNKTSDHLPSDNTLVSENPSTSAADKFQDAPYKQAMNELPSMPIRTQEQVNLACAGNQQVGIGVSMGSASNSVSLTLGLHQNHGIGLAEPFPLSAARRFGLGLETNGEGYVMSGFESQNRHFGRDVIGGQLLHDFVG 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30439g00005 676 Pfam Homeobox KN domain 473 512 IPR008422 GO:0003677|GO:0006355
Stsc30439g00005 676 MobiDBLite consensus disorder prediction 527 545 - -
Stsc30439g00005 676 SMART prehox3 273 413 IPR006563 -
Stsc30439g00005 676 ProSiteProfiles 'Homeobox' domain profile. 453 516 IPR001356 GO:0003677
Stsc30439g00005 676 MobiDBLite consensus disorder prediction 546 564 - -
Stsc30439g00005 676 FunFam BEL1-like homeodomain protein 9 459 521 - -
Stsc30439g00005 676 MobiDBLite consensus disorder prediction 183 211 - -
Stsc30439g00005 676 SMART HOX_1 456 520 IPR001356 GO:0003677
Stsc30439g00005 676 SUPERFAMILY Homeodomain-like 458 523 IPR009057 -
Stsc30439g00005 676 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 186 538 - -
Stsc30439g00005 676 CDD homeodomain 456 517 IPR001356 GO:0003677
Stsc30439g00005 676 MobiDBLite consensus disorder prediction 527 564 - -
Stsc30439g00005 676 MobiDBLite consensus disorder prediction 109 153 - -
Stsc30439g00005 676 Gene3D - 459 521 - -
Stsc30439g00005 676 MobiDBLite consensus disorder prediction 424 444 - -
Stsc30439g00005 676 Pfam Associated with HOX 278 412 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30439g00005 Stsc-Chr30439 17369 23975 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30439g00005 161 676 Homeobox Transcription Factor Family AT5G02030 47.786 9.36e-121 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Stsc30439g00005 POX 1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30439g00005 - - ahf:112727818 961.829