Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30437g00008 ATGTGCCTAGTAACAACGGTGGCGCACCAAAGGAAGTCAGGTGAGTTCATCCGGTTCACGGCGCAGCATGGCGGTGTTGACGGCGGAGATGAGGAACACAGCAGCGACAACGGCGGCGGCAGCGGAAGAAGAAGAATATCATATGAACAAGTAATTGGAAACAATAATAAGGAAGGTGATGAGGTGGAAAGAACATCAATGCAAAGTTCAATGGAATTGAGTGACATCATGCTTTCGGCTCTGACAAATTCGTCTTCCTCTTCTTCTCAATCCCAATCTCATCAAAGCGGCACCGAATGGTTCGGTTCTTCTTCTTTTTCTTCTTCTGCTTCTCATTATCCTATGATGATGTCGGATTTTGGACACGTGTCATCGTTGTCTTCTTTCACTTCATCATCCTCATCTTCTTCATGGGTTGGCCAAAAGAGAGGACGTGAAGAACAACACATGATTGGTGCTTCTTCATCTTCATCTTCTTCTTCATCTCAATCTCAATCTCATCAATATAACTTTGTTCAACAACCTGTTCCTAGATTCTTTAGAACCAATAATATTGGTGACTTCAAGGTTCCACCACCTTCTCATCAACCACAATCATCTCCAGGAGTGACGGAAGAAGCTTCTTCCATCACCACGGCGGCAACCACCGTAGCGGCCACCACCACAACGCCGGCAACGCCGTCGAGCGAGGCGGCGTCATACGAAGAAACAGGGGAGAGAAGGAGAAGATACAGGGGAGTCAGACAAAGGCCATGGGGAAAATGGGCGGCGGAGATTCGAGATCCTCACAAGGCGGCCAGAGTGTGGCTCGGCACCTTCGACACGGCGGAAGCCGCCGCAAGAGCCTACGACGAAGCCGCATTGAGATTCAGAGGAAACAGAGCAAAACTCAATTTCCCAGAAAATGTTAGAGCAGTTCCACAACCAATTCCGGCCATGGCAGCCACCACCACCGCCTCCGCTGCCGCAAGTTTCCGCCGTCCTCCGCCGCAGATATACCAGCCAGCACCACCACCACAACCAGCACAATTGGTTGTTCAGCAGCCACAGTTTCATGGAAGCAATGATATGATCAGAGACTATTTGGAATATTCTCTGCTTCTACAGAGTTCTGGTGATTTTCAACAACAACAAATGAATCAACAACCTTCGAATTTGAATTTGTTGCAACAGTTTTACTATAATTCACAATTGGCGGCGCTTCAATCTTCTTCTTCTTCTTCTTCATCATCAATGTTTTCAGGTTCAGCTCAATCTTCCTCTGCTTCACTTCCCCTGTTTCCTACTCAGCAAATGGGGGTTTTCCGGCCACCGGGAAACCATCCTCACGGCGGCGCCGGTGCCGGAGGATTAGATTTTCTCCCTTCAACTTGGTCAGATACCAGTGGCTATCCACCACCATCTGGTTGA 1410 0.4851 MCLVTTVAHQRKSGEFIRFTAQHGGVDGGDEEHSSDNGGGSGRRRISYEQVIGNNNKEGDEVERTSMQSSMELSDIMLSALTNSSSSSSQSQSHQSGTEWFGSSSFSSSASHYPMMMSDFGHVSSLSSFTSSSSSSSWVGQKRGREEQHMIGASSSSSSSSSQSQSHQYNFVQQPVPRFFRTNNIGDFKVPPPSHQPQSSPGVTEEASSITTAATTVAATTTTPATPSSEAASYEETGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVRAVPQPIPAMAATTTASAAASFRRPPPQIYQPAPPPQPAQLVVQQPQFHGSNDMIRDYLEYSLLLQSSGDFQQQQMNQQPSNLNLLQQFYYNSQLAALQSSSSSSSSSMFSGSAQSSSASLPLFPTQQMGVFRPPGNHPHGGAGAGGLDFLPSTWSDTSGYPPPSG 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30437g00008 469 MobiDBLite consensus disorder prediction 150 169 - -
Stsc30437g00008 469 FunFam Ethylene-responsive transcription factor 2 242 301 - -
Stsc30437g00008 469 MobiDBLite consensus disorder prediction 25 39 - -
Stsc30437g00008 469 MobiDBLite consensus disorder prediction 199 233 - -
Stsc30437g00008 469 MobiDBLite consensus disorder prediction 455 469 - -
Stsc30437g00008 469 Pfam AP2 domain 243 292 IPR001471 GO:0003700|GO:0006355
Stsc30437g00008 469 MobiDBLite consensus disorder prediction 81 104 - -
Stsc30437g00008 469 ProSiteProfiles AP2/ERF domain profile. 243 300 IPR001471 GO:0003700|GO:0006355
Stsc30437g00008 469 SMART rav1_2 243 306 IPR001471 GO:0003700|GO:0006355
Stsc30437g00008 469 MobiDBLite consensus disorder prediction 428 469 - -
Stsc30437g00008 469 MobiDBLite consensus disorder prediction 134 169 - -
Stsc30437g00008 469 MobiDBLite consensus disorder prediction 22 45 - -
Stsc30437g00008 469 PRINTS Ethylene responsive element binding protein signature 244 255 IPR001471 GO:0003700|GO:0006355
Stsc30437g00008 469 PRINTS Ethylene responsive element binding protein signature 266 282 IPR001471 GO:0003700|GO:0006355
Stsc30437g00008 469 Gene3D AP2/ERF domain 242 302 IPR036955 GO:0003700|GO:0006355
Stsc30437g00008 469 MobiDBLite consensus disorder prediction 182 242 - -
Stsc30437g00008 469 CDD AP2 251 302 IPR001471 GO:0003700|GO:0006355
Stsc30437g00008 469 PANTHER DNA-BINDING DOMAIN 164 402 IPR044808 GO:0003700|GO:0009873
Stsc30437g00008 469 SUPERFAMILY DNA-binding domain 243 301 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30437g00008 Stsc-Chr30437 58912 60952 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30437g00008 197 307 AP2-EREBP Transcription Factor Family AT2G33710 53.226 8.30e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc30437g00008 AP2 9.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30437g00008 - - ahf:112803013 465.692