Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30436g00005 ATGTCTCAACTTGAGTTGCTAGATTCCGGTGGTGTAAGCTGTATAAATTGCACAAGAAATTCAGGACATCAACATGTTGTGGGTACCAAAAAGCCTACTGGATCAGGGGCATCAAAGGTAAAGAATGTTGGTGAACAACTATGTCCATCTCTAGATAACCAATTAAATGCAAGGGGTATGCAAGTAGGACATTACACAGATAGTGATGGGCTGAGATGGTGGCTTAAACCTCATAATCCTGATACAAATGGCCCTTCTCTAGAGATAAAAATAGAAGAAGGTTTGCCTTCTACTGCAGAACTTGGAAGCACATTGATATCACAATTTCTCTGCAAACCTAATGGATCATCTAGGGTTGCCAAATCAGACAACTGTCCGGCAGATATGGAGATGCAAGATATATATGAATCAGTGGCACATGCAAATTTGAGTATGACTCTTGCTGCTCCTTCAGGAAATTCAAATCCCTTTAATAGTGCCATTGCTGATGAAAGGGAACAGTGTATGGTGTCCCAAATCCGCGTAGCAAGGCCTCCTGCTGAGGGACGTGGAAGAAATCAGCTCCTTCCCCGTTACTGGCCTAGGATTACAGATCAAGAGTTGCAGCAAATATCAGGAGATTCAAATTCCACCATTGTGCCACTCTTTGAGAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTGGTTTTACCAAAAGCATGTGCTGAAGCATATTTCCCTCCTATCTCTCAACCAGAGGGCCTTCCTCTACGAATCCAAGATGTGAAAGGAAAAGAATGGGTGTTTCAGTTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTCTAGAAGGTGTAACTCCTTGCATTCAGTCTATGCAACTGCAAGCTGGAGATACTGTAACTTTTAGCCGAATGGACCCTGAGGGGAAACTTATTATGGGGTTTAGGAAGGCAACAAATTCTGCTGCAGTACAGGAATCTCATCCGTCTAATATGCCCAATGGCTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATCTACCTATATTAAGTGGTTATTCTGGCCTTCTCCAGTCACAAAAGGGAAATTCAGAATCCCCACTAAATGCGCTGTCTAAAAAATGGAATTCAGCTGGTGGTGACATGAATTGGCATAATATTGAAATGCCCCAAAAAAGGACAAGAGAAGGATTGCTTTTGCCGCCTATGTTGGTTCCTGAGAAGAAAAAAACCCGGAATATTGGGTCAAAAAGTAAGAGGTTGCTTATTGATAGCCAAGATGCACTGGAGTTGAAGCTTACATGGGAAGAGGCACAGGATTTGCTTCGTCCTCCTCCAGCTGCTAAACCAAGCATCGTCATGATTGAAGATCATGTATTTGAAGAATATGAAGAACCTCCTGTCTTTGGAAAAAGGAGTATATTCGTAGCCCGCGCTACTGGGATAAATGAGCAGTGGGCACAGTGTGATAATTGCTCAAAATGGAGGAAGTTACCAGTTGATGTACTTGTTCCTCCTAAGTGGACATGTGCTGATAACTTGTGGGATCAGAGCAGGCGTTCATGTTCTGCTCCAGACGAATTGAGCCCAAGGGAGCTGGATAATCTCTTGCGACTGATCAAGGATTTCAAGAAACAGCGAATGACTGCCAGCCAAAGACCAACCCTGGAACATGAATCTTCTGGACTGGATGCTTTGGCAAAAGCTGCAATTCTTGGAGATGATGCAGGTGACACTAGCAGAACACCAGTTGCTACTACTACAAAGCACCCTCGGCATAGACCTGGTTGTTCCTGTATTGTTTGTATCCAACCACCTAGTGGGAAGGGCAAACACAAACCTACATGCACCTGTAATGTGTGCATGACAGTAAAACGCAGGTTTAAAACCCTTATGATGCGAAAGAAGAAGCGACAATCTGAGCGTGAAGCGGAGATTGCTCAGAGAAATCAGCAATCATGGGTGACCAAAGATGAATCTGAAGTAGAAAGCACCTCCCGCCATGTAACTCCAGGCGATGGTTCAGAGAATGAAGCAAGGGTGCCAAACGAGTTGGATTCAAGGAGTCAAGACCATGCGGATGATGCTGCCAAGGGACAGTTAGATTTGAACTGCCAACCTGATCGAGAAGACGCTCAAGCTGGGCCGAACAGCATGAGCATGATGGGTCTTCTTGAAGAAGCAAAACTGCCATTGGAGACCTACCTGAAGAAAAATGGTCTTACTAGCTTGATGTCAGAACAGCAAACAAATTCAGCCTCAAACTTGCAGGCACAGACAACCAATGACAGTGAGGGAAGACAAAACGAGGATTGTTGTACAGCTTCTGCTGTTCAGGAGCAGGAAAGCAGTCCCGAGGAAAGCAGTGAGCAAGACAAAGGCCAAAACAATTCATGA 2400 0.4421 MSQLELLDSGGVSCINCTRNSGHQHVVGTKKPTGSGASKVKNVGEQLCPSLDNQLNARGMQVGHYTDSDGLRWWLKPHNPDTNGPSLEIKIEEGLPSTAELGSTLISQFLCKPNGSSRVAKSDNCPADMEMQDIYESVAHANLSMTLAAPSGNSNPFNSAIADEREQCMVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSAAVQESHPSNMPNGSHSSETSYSGVYENLPILSGYSGLLQSQKGNSESPLNALSKKWNSAGGDMNWHNIEMPQKRTREGLLLPPMLVPEKKKTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPAAKPSIVMIEDHVFEEYEEPPVFGKRSIFVARATGINEQWAQCDNCSKWRKLPVDVLVPPKWTCADNLWDQSRRSCSAPDELSPRELDNLLRLIKDFKKQRMTASQRPTLEHESSGLDALAKAAILGDDAGDTSRTPVATTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQQSWVTKDESEVESTSRHVTPGDGSENEARVPNELDSRSQDHADDAAKGQLDLNCQPDREDAQAGPNSMSMMGLLEEAKLPLETYLKKNGLTSLMSEQQTNSASNLQAQTTNDSEGRQNEDCCTASAVQEQESSPEESSEQDKGQNNS 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30436g00005 799 MobiDBLite consensus disorder prediction 747 799 - -
Stsc30436g00005 799 Pfam CW-type Zinc Finger 486 528 IPR011124 GO:0008270
Stsc30436g00005 799 ProSiteProfiles Zinc finger CW-type profile. 481 531 IPR011124 GO:0008270
Stsc30436g00005 799 SMART B3_2 216 316 IPR003340 GO:0003677
Stsc30436g00005 799 ProSiteProfiles B3 DNA-binding domain profile. 216 317 IPR003340 GO:0003677
Stsc30436g00005 799 FunFam B3 domain-containing transcription repressor VAL1 194 321 - -
Stsc30436g00005 799 Gene3D - 194 321 IPR015300 -
Stsc30436g00005 799 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 2 753 - -
Stsc30436g00005 799 Gene3D - 484 540 - -
Stsc30436g00005 799 SUPERFAMILY DNA-binding pseudobarrel domain 213 315 IPR015300 -
Stsc30436g00005 799 Coils Coil 534 554 - -
Stsc30436g00005 799 Pfam B3 DNA binding domain 216 315 IPR003340 GO:0003677
Stsc30436g00005 799 MobiDBLite consensus disorder prediction 633 696 - -
Stsc30436g00005 799 CDD B3_DNA 214 315 IPR003340 GO:0003677
Stsc30436g00005 799 MobiDBLite consensus disorder prediction 680 696 - -
Stsc30436g00005 799 MobiDBLite consensus disorder prediction 575 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30436g00005 Stsc-Chr30436 13507 18534 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30436g00005 4 752 B3 DNA Binding Superfamily AT4G32010 47.315 0.0 654
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc30436g00005 B3 1.9e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30436g00005 K09287 - gmx:100778833 1328.54