Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30436g00004 ATGTCTCAACTTGAGTTGCTAGATTCCGGTGGTGTAAGCTGTATAAATTGCACAAGAAATTCAGGACATCAACATGTTGTGGGTACCAAAAAGCCTACTGGATCAGGGGCATCAAAGGTAAAGAATGTTGGTGAACAACTATGTCCATCTCTAGATAACCAATTAAATGCAAGGGGTATGCAAGTAGGACATTACACAGATAGTGATGGGCTGAGATGGTGGCTTAAACCTCATAATCCTGATACAAATGGCCCTTCTCTAGAGATAAAAATAGAAGAAGGTTTGCCTTCTACTGCAGAACTTGGAAGCACATTGATATCACAATTTCTCTGCAAACCTAATGGATCATCTAGGGTTGCCAAATCAGACAACTGTCCGGCAGATATGGAGATGCAAGATATATATGAATCAGTGGCACATGCAAATTTGAGTATGACTCTTGCTGCTCCTTCAGGAAATTCAAATCCCTTTAATAGTGCCATTGCTGATGAAAGGGAACAGTGTAAAACCTCACCTCCACTTTTACTAGGGTCTAGGTCTCGCCACCTTTTACCAAAGCCTCCTAGGTCAAGCCTTGGTTCAAGCTTAGAAACAAATGCAGGTATGGTGTCCCAAATCCGCGTAGCAAGGCCTCCTGCTGAGGGACGTGGAAGAAATCAGCTCCTTCCCCGTTACTGGCCTAGGATTACAGATCAAGAGTTGCAGCAAATATCAGGAGATTCAAATTCCACCATTGTGCCACTCTTTGAGAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTGGTTTTACCAAAAGCATGTGCTGAAGCATATTTCCCTCCTATCTCTCAACCAGAGGGCCTTCCTCTACGAATCCAAGATGTGAAAGGAAAAGAATGGGTGTTTCAGTTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTCTAGAAGGTGTAACTCCTTGCATTCAGTCTATGCAACTGCAAGCTGGAGATACTGTAACTTTTAGCCGAATGGACCCTGAGGGGAAACTTATTATGGGGTTTAGGAAGGCAACAAATTCTGCTGCAGTACAGGAATCTCATCCGTCTAATATGCCCAATGGCTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATCTACCTATATTAAGTGGTTATTCTGGCCTTCTCCAGTCACAAAAGGGAAATTCAGAATCCCCACTAAATGCGCTGTCTAAAAAATGGAATTCAGCTGGTGGTGACATGAATTGGCATAATATTGAAATGCCCCAAAAAAGGACAAGAGAAGGATTGCTTTTGCCGCCTATGTTGGTTCCTGAGAAGAAAAAAACCCGGAATATTGGGTCAAAAAGTAAGAGGTTGCTTATTGATAGCCAAGATGCACTGGAGTTGAAGCTTACATGGGAAGAGGCACAGGATTTGCTTCGTCCTCCTCCAGCTGCTAAACCAAGCATCGTCATGATTGAAGATCATGTATTTGAAGAATATGAAGAACCTCCTGTCTTTGGAAAAAGGAGTATATTCGTAGCCCGCGCTACTGGGATAAATGAGCAGTGGGCACAGTGTGATAATTGCTCAAAATGGAGGAAGTTACCAGTTGATGTACTTGTTCCTCCTAAGTGGACATGTGCTGATAACTTGTGGGATCAGAGCAGTTTTTCAATGCTTTTACTAGGCGTTCATGTTCTGCTCCAGACGAATTGA 1707 0.4271 MSQLELLDSGGVSCINCTRNSGHQHVVGTKKPTGSGASKVKNVGEQLCPSLDNQLNARGMQVGHYTDSDGLRWWLKPHNPDTNGPSLEIKIEEGLPSTAELGSTLISQFLCKPNGSSRVAKSDNCPADMEMQDIYESVAHANLSMTLAAPSGNSNPFNSAIADEREQCKTSPPLLLGSRSRHLLPKPPRSSLGSSLETNAGMVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSAAVQESHPSNMPNGSHSSETSYSGVYENLPILSGYSGLLQSQKGNSESPLNALSKKWNSAGGDMNWHNIEMPQKRTREGLLLPPMLVPEKKKTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPAAKPSIVMIEDHVFEEYEEPPVFGKRSIFVARATGINEQWAQCDNCSKWRKLPVDVLVPPKWTCADNLWDQSSFSMLLLGVHVLLQTN 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30436g00004 568 Pfam B3 DNA binding domain 249 348 IPR003340 GO:0003677
Stsc30436g00004 568 SUPERFAMILY DNA-binding pseudobarrel domain 246 348 IPR015300 -
Stsc30436g00004 568 Gene3D - 512 555 - -
Stsc30436g00004 568 Gene3D - 227 354 IPR015300 -
Stsc30436g00004 568 CDD B3_DNA 247 348 IPR003340 GO:0003677
Stsc30436g00004 568 ProSiteProfiles Zinc finger CW-type profile. 514 568 IPR011124 GO:0008270
Stsc30436g00004 568 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 2 554 - -
Stsc30436g00004 568 ProSiteProfiles B3 DNA-binding domain profile. 249 350 IPR003340 GO:0003677
Stsc30436g00004 568 SMART B3_2 249 349 IPR003340 GO:0003677
Stsc30436g00004 568 MobiDBLite consensus disorder prediction 172 196 - -
Stsc30436g00004 568 FunFam B3 domain-containing transcription repressor VAL1 227 354 - -
Stsc30436g00004 568 Pfam CW-type Zinc Finger 519 552 IPR011124 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30436g00004 Stsc-Chr30436 13507 18534 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30436g00004 4 550 B3 DNA Binding Superfamily AT4G32010 51.460 4.27e-177 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc30436g00004 B3 1.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30436g00004 K09287 - gmx:100778833 946.036