Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30436g00003 ATGGCGGCATCCTTGTTAGGAGGAGCTGCTATAGGAGCTGTGTTTGGAGAACTGTTGAAAGCAGTTATAGATATGAAAGACAAAGCAGTTATGTTCAAACCAACTTTAGCATACCTCACAACAACGTTAATAGCAATAGAACCTGTCATCAAGGAAATAGAACAACAAAACACCGAACTGGGCCGCGCGAGCGCGGAGCTAGAGTTGTTGATGAAGGAAATGGAAGAAGGCACAAAGCTTGTTTACAAGTGTTCCAAAATCCACAAGCTGAATCTTCTGGCTAGGATTCGGTACCAAGAACAATTGGTAGCATTGGTAGAGTCTCTGGTGAGGTTTTTCATGATTGATATGCAGGCTCAGACCGCAAGGGATTTGAAAGAGACGTTGTTGAAGGTTAGAAGAATACATAGCGCCGTTAATAAGATGCAATTGAATAGCAATCAAGAAAATGGTGATGCTGGTGGTGGTGGTGGTTTAGTTCCTGTGGAGTTGATTCAGATGGATGTAAATGATGAGAATGCAACGGAAATAACTGATTCTACTCCGGAAATCGCGGTCGAATCGGAGATTCTTGGGAATGATTCTGCTGAAAAAGTCATGGAAGATGGTACTACACTCTCATACATTGCTAGTCAAACTAAAGAAGAAGAAAAGAATAGCCAAGAAGAAAAGCATTCCCATGATCAAGAAAAGAAAAGTGGTGGATTTAACCCCTTAGAACAACCCTCTGTTCCTTCCATACCACATAATAGAATGATTATTTATGAAGGGTGTCCTTATAACTTTGATCTTGAGGATTTGTTGAGAGCTTCTGCGGAACATCTTGGAACATCAAGTTATGCTACTACCTACAAAATCCTCTTGGAGAATGGCGTAAGATTAGTTATCAAGAGATTAAAAGATGTGATGGTAGAAAAGCAAGAATTTGAACACAAGATTGAGATTGTGCAAAGAATTTCTCAGCACCCAAATGTTCTGCCTCCTCTTGCCTGCTATTGTTCCAATGATGAAAAGCTACTGATTTATGCCTACATGACACAAGGCAGCTTTTCCAAGCTATTGCATGGAGAAAACGAAAATAGAGAGGCCCCACCACTAGATTGGGATTCAAGAATGAAGATTTCACTTGGAGTTGCCAAGGGTCTTGCTCACATCCACTCTCTGGAAGGAGGAACTTATGTCCATGGCAATATAAGGTCATCCAATGTGCTTGTCACAAATGATCATCAAGGTTGCATATCAGATCTCTCAATGACTTATTCACTAAGTAACTCCTTCGACCAATTTAGAAACACAGGTTACCAACAGACATATGAATTTGACATTTTCGGAATAAAGGAACAAGGGAAACTGACTCAAGAATGTGATGTGTATAGCTTTGGTGTTCTTCTTTTTGAGATGCTAACTGGAAGATTGCCATCACAGTATATTAATCTACCAGAAAGTGTTACCGATCATGCCAGGGACGGCATTTATGTGTATGATAGTGTAATTAATTCAAATAATAAAAAGAATGCCAGGAAGATGAGACAATTGGCAGAGAAATGTTGTGCGTTTTTACCTAGTAAAATGCCATTGCCATCCATGGCTGAGGTTGTTAGAGAAATGGAAGAAATAAGATCACTATAG 1629 0.3984 MAASLLGGAAIGAVFGELLKAVIDMKDKAVMFKPTLAYLTTTLIAIEPVIKEIEQQNTELGRASAELELLMKEMEEGTKLVYKCSKIHKLNLLARIRYQEQLVALVESLVRFFMIDMQAQTARDLKETLLKVRRIHSAVNKMQLNSNQENGDAGGGGGLVPVELIQMDVNDENATEITDSTPEIAVESEILGNDSAEKVMEDGTTLSYIASQTKEEEKNSQEEKHSHDQEKKSGGFNPLEQPSVPSIPHNRMIIYEGCPYNFDLEDLLRASAEHLGTSSYATTYKILLENGVRLVIKRLKDVMVEKQEFEHKIEIVQRISQHPNVLPPLACYCSNDEKLLIYAYMTQGSFSKLLHGENENREAPPLDWDSRMKISLGVAKGLAHIHSLEGGTYVHGNIRSSNVLVTNDHQGCISDLSMTYSLSNSFDQFRNTGYQQTYEFDIFGIKEQGKLTQECDVYSFGVLLFEMLTGRLPSQYINLPESVTDHARDGIYVYDSVINSNNKKNARKMRQLAEKCCAFLPSKMPLPSMAEVVREMEEIRSL 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30436g00003 542 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 216 540 IPR046959 -
Stsc30436g00003 542 Coils Coil 50 73 - -
Stsc30436g00003 542 Gene3D Transferase(Phosphotransferase) domain 1 345 542 - -
Stsc30436g00003 542 ProSiteProfiles Protein kinase domain profile. 269 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30436g00003 542 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 3 135 IPR008808 -
Stsc30436g00003 542 MobiDBLite consensus disorder prediction 212 243 - -
Stsc30436g00003 542 Gene3D Phosphorylase Kinase; domain 1 248 344 - -
Stsc30436g00003 542 ProSiteProfiles RPW8 domain profile. 1 151 IPR008808 -
Stsc30436g00003 542 SUPERFAMILY Protein kinase-like (PK-like) 273 535 IPR011009 -
Stsc30436g00003 542 MobiDBLite consensus disorder prediction 215 234 - -
Stsc30436g00003 542 Pfam Protein tyrosine and serine/threonine kinase 273 524 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30436g00003 Stsc-Chr30436 6525 9658 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30436g00003 250 540 Receptor kinase-like Gene Family AT5G58300 43.189 7.57e-72 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc30436g00003 PK_Tyr_Ser-Thr 1.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30436g00003 - - aip:107625870 696.812