Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30434g00005 ATGTCTCAAATGAGGTTTCTACTGCAACCCATTTTCCTCCATGAATTGTCTGCCATTTTCCACCTCATGCTGGTGGCTATGGTTGTGTTGTCATGGCTTTGGAAGAAAATCACAGTTGGAGACACTAGTGATGATTCTAACAAGCACTATAAGCTCAAGAATAAAGCTTTGTTAAGAAAGACTTTGTTTTTCTCTTTGGGTGTTTCTGCTTTCAACTGTATCCTCTGCCTCTATAGTTATTACTTCTTAGGCTTAGAAGATGAAGGAAAGCTTGTGACCCTTTTGGATTTAGCTCTCAAAACTGTTGCTTGGTGTCTTAGTATTAGTGAGTGTGAAGAGAATCATATCAGTGATGATCTTCAAGAACCACTTCTGTTGAATAATGGCATTGCAACTGTTTGTAGTAATGCCTCTGAGGGTGACAATGTTACCCCTTTCTCAAATGCTGGCATTTTCAGCATTCTTACATTCTCTTGGGTGGGCCCTCTTATTGCTCTTGGCAATAAGAAGACCTTGAACCCTGAGGATGTTCCTAAACTTGATAAAGGAGACAGTGTTTTTGGGGTTTTTCCAACTTTCAGAGAAAGAGTTGAGAAAGATTGTGGTGAAATCAACCACATAAGCACTCTTAAGCTGGTGAAGTTGTTGGTGCTCTCAGCTTGGAGAGAGATTCTCTTCACTGGCTTTCTTGCATTGCTCAACACTTTGGCTTCTTATGTTGGTCCTTATCTCATTGATTCTTTTGTTCAATACCTTGATGGACAAAGGGTGAATGAGAAGCAGGGCTATGTTCTGGTTTCTGCATTTTTCATCTCAAAACTTGTTGAGTCCCTTTCACAAAGACATTGGTTGTTTAGGTTGCAGCAAGTTGGAATTAGAATCCAAGCACTGCTTGTAACTCTGATCTATAACAAAGGATTAACCCTTTCATGTCAATCAAAGAAGGGTCATACTTCTGGTGAAATGATCAATTTCATGGCTGTTGATGCTGGAAGAGTTGGCAACTTCAGTTGGTATATGCATGATTTGTGGAGGGTAGCTCTGCAAATTGCATTGGCCTTGTTGATTTTGTATAAAAATGTCGGTCTTGCTTCGATCGCCGCGTTTGTGGCAACCATCATTGTAATGTTGATAAATGTTCCTCTGGGAAAGTTACAAAAGAAGTTTCAGAAGAACATGATGGACTCGAAGGATACAAGGATGAAGGCGACATCTGAGATTCTAAGGAACATGAAGATTCTCAAACTACAAGGATGGGAAATGAAGTTCTTATCTAAGATAACTGGCCTTAGGAAAACTGAGGAAGGGTGGTTAAAGAAATCTGTTTACAACGGAGCTATCACTGCTTTTGTGTTCTGGGTTGCTCCTACTTTTGTATCCGTTGTTACTTTCGGTGCATGCATGCTTATGGGGATTCCACTCGAATCAGGGAAGATCTTATCAGCACTTGCAACATTCAGAAACCTTCAAGTTCCCATATATAATCTTCCAAGTACAATTTCAGCTATAATACAAACTAAGGTTTCTCTTGATAGGATTTCGTCGTTCCTTCGACTCGAGGACTTGCAATCTGATGTTGTAGAGAAGCTCCCTTTCGGTACTTCAGATAAAGCAATTGAAGTAACTAACGGGAACTTCTCTTGGGATCTATCTTCTTCAATTACAACATTGAAGAACATAAATCTCGAAGTTTTTCAAGGCATGAAGGTTGCTGTTTGTGGGACAGTAGGGTCAGGGAAGTCTACATTGCTTTCTTGTATATTGGGAGAGGTACCAAAGGTTTCAGGAACTCTAAAAGTTTGTGGAACAAAGGCCTATGTTGCTCAATCACCATGGATACAAAGTGGGAAGATAGAAGAAAATATACTGTTTGGTAAAGAGATGGACAGGGAAAGGTATGAGAAGGTTCTTGAAGCCTGTTCCCTGAAAAAGGATCTTGAAATTTTGCCATTTGGTGACCAAACAATTATTGGAGAACGCGGGATAAATTTGAGTGGTGGACAAAAACAAAGGATACAAATCGCTCGATCTCTTTACCAAGATGCTGATATATATATGTTTGATGATCCTTTCAGTGCTGTGGATGCTCATACAGGATCACACCTCTTTAAGGAATGTTTGCTAGGCCTTTTAAGTTCAAAGACAGTAGTTTATGTTACTCATCAAGTTGAGTTCTTACCTGCTGCTGATCTTATATTGGTAATGAAAGATGGGGAGATTACTCAATGTGGAAAGTATGCTGATCTGCTTAAAAATGGAACTGATTTTATGGAACTTGTTGGTGCACATAAAAAAGCTTTGTCCACACTTGATTCAATGGATGAAGGAATAGTATCCAATGAAATAAGTTCCTTGGAACAAGATTTAGATGTTCCAGTTTCTCAGGGTGGAGAAAAAGAAGAGGAAAAGAAAGATGAGCAAAATGGTAAAATCGGTAACAAAGGTGATGAGGCGAAAGGCCAACTTGTTCAAGAAGAAGAAAGAGAGAGAGGTAAAGTTGGATTTTCAGTGTATTGGCAGTATATAACTACTGCATATGGAGGTGCTCTTGTTCCTTTCATTCTATTGGCTCATGTTCTCTTCCAAGTTCTTCAAATTGGAAGCAACTATTGGATGGCTTGGGCAACACCAATCTCACAAGATGTGCAGCCACCTGTTTCGAGCACAACTCTTATAGCTGTCTATGTTGCTTTGTCTGTTGCAAGTTCTTTCTGCATCCTTGGAAGGACAACACTTCTTGCCACTGCTCTTTATAAGACAGCTACGATAATCTTCAATAAGATGCACTTCTGCATCTTTCGCGCTCCAATGGCATTCTTTGATTCCACTCCAAGCGGCCGAATTCTTAATAGAGTTTCTACTGACCAAAGTGCAGTAGACACAATCATTCCTTATCAAGCTGCTTCTTTTGTCTTTCTCCTGATCCAGCTTTTGGGAATTGTTGCAGTGATGTCTCAATCTGCATGGCAAGTTTTCATTGTCTTCATACCTGTCATAGCAATCAGCATTTGGTATCAGCAATATTATTTACCACCATCTCGAGAACTGTCGCGATTAGTTGGAGTATGCAAAGCACCAATCATTCAGAACTTCTCTGAAACAATTTCTGGCACATCAACCATTAGAAGCTTTGATCAGCAGTCTAGATTTCAGGAAAAGAATATGAAACTAATTGATGGGTATTCACAGCCAAATTTCAATAGTGCTGGTGCATCTGCGTGGTTGTGCTTCCGTTTGGATATATTGTCTTCAATCACATTTGCCTTTTCTGTGATATGCTTGATGCTTATTCCTAAAGGAGTTATAGATCCAGGCCTTGCTGGTTTATCTGTTACCTATGGACTCAATTTGAACTCGGTTAATGCTACGGTGATTCGGATTCTTTGCGACTTGGAGAACAAGATGATATCAGTAGAAAGAATACTTCAGTATACATCCATTCCTAGTGAGCCTCCTCTTGTTGTAGAAGAAAATAAACCAAATCCTTCTTGGCCGTCACATGGAGAAGTTGATATATGCAACTTGCAGGTTCGGTATGCTCCACACCTTCCACTTGTGTTGCATGGCCTCACATGCACATTTCGCGGAGGATTGAAAACCGGCATTGTTGGGAGAACAGGAAGTGGCAAAACAACTCTCATACAAACTCTGTTCCGAATCATCGAACCAGCTGCTGGAGAAGTTCTGATTGATGGCATCAACATATCTTCAATTGGACTTCATGATTTGAGGTCTAGATTAAGCATTATTCCTCAGGATCCAACCATGTTTGAAGGGACAGTTAGAAACAATCTGGATCCACTAGAGGAGTACACTGATGAACAAATTTGGGAGGCCCTTGAAAAGTGTCAACTTGGTGATGAAGTTAGAAGAAAAGAAGGAAAGTTGGACTCTCCAGTTAGCGAAAATGGCGAGAATTGGAGCATGGGACAGAGGCAATTGGTGTGCCTAGGTAGGGTGCTTCTGAAGAAGAGCAAGGTATTGGTGCTTGACGAAGCGACTGCATCGGTTGATACTGCCACAGACAATTTGATTCAACAAACTCTCAGGCTGCATTTCTCTGACTCAACAGTCATAACCATTGCACATAGAATCACTTCTGTTCTTGACAGTGATATGGTCTTGCTTCTTCATCAAGGACTAATTGAAGAGTATGACTCACCTTCAAAATTGCTAGAGGATAAGTCATCATCTTTTGCTCAACTTGTTGCAGAGTATACAATGAGATCCAAAACTAATTTTGAGAAATCTTCTAATCACTGA 4263 0.4021 MSQMRFLLQPIFLHELSAIFHLMLVAMVVLSWLWKKITVGDTSDDSNKHYKLKNKALLRKTLFFSLGVSAFNCILCLYSYYFLGLEDEGKLVTLLDLALKTVAWCLSISECEENHISDDLQEPLLLNNGIATVCSNASEGDNVTPFSNAGIFSILTFSWVGPLIALGNKKTLNPEDVPKLDKGDSVFGVFPTFRERVEKDCGEINHISTLKLVKLLVLSAWREILFTGFLALLNTLASYVGPYLIDSFVQYLDGQRVNEKQGYVLVSAFFISKLVESLSQRHWLFRLQQVGIRIQALLVTLIYNKGLTLSCQSKKGHTSGEMINFMAVDAGRVGNFSWYMHDLWRVALQIALALLILYKNVGLASIAAFVATIIVMLINVPLGKLQKKFQKNMMDSKDTRMKATSEILRNMKILKLQGWEMKFLSKITGLRKTEEGWLKKSVYNGAITAFVFWVAPTFVSVVTFGACMLMGIPLESGKILSALATFRNLQVPIYNLPSTISAIIQTKVSLDRISSFLRLEDLQSDVVEKLPFGTSDKAIEVTNGNFSWDLSSSITTLKNINLEVFQGMKVAVCGTVGSGKSTLLSCILGEVPKVSGTLKVCGTKAYVAQSPWIQSGKIEENILFGKEMDRERYEKVLEACSLKKDLEILPFGDQTIIGERGINLSGGQKQRIQIARSLYQDADIYMFDDPFSAVDAHTGSHLFKECLLGLLSSKTVVYVTHQVEFLPAADLILVMKDGEITQCGKYADLLKNGTDFMELVGAHKKALSTLDSMDEGIVSNEISSLEQDLDVPVSQGGEKEEEKKDEQNGKIGNKGDEAKGQLVQEEERERGKVGFSVYWQYITTAYGGALVPFILLAHVLFQVLQIGSNYWMAWATPISQDVQPPVSSTTLIAVYVALSVASSFCILGRTTLLATALYKTATIIFNKMHFCIFRAPMAFFDSTPSGRILNRVSTDQSAVDTIIPYQAASFVFLLIQLLGIVAVMSQSAWQVFIVFIPVIAISIWYQQYYLPPSRELSRLVGVCKAPIIQNFSETISGTSTIRSFDQQSRFQEKNMKLIDGYSQPNFNSAGASAWLCFRLDILSSITFAFSVICLMLIPKGVIDPGLAGLSVTYGLNLNSVNATVIRILCDLENKMISVERILQYTSIPSEPPLVVEENKPNPSWPSHGEVDICNLQVRYAPHLPLVLHGLTCTFRGGLKTGIVGRTGSGKTTLIQTLFRIIEPAAGEVLIDGINISSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEYTDEQIWEALEKCQLGDEVRRKEGKLDSPVSENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRLHFSDSTVITIAHRITSVLDSDMVLLLHQGLIEEYDSPSKLLEDKSSSFAQLVAEYTMRSKTNFEKSSNH 1420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30434g00005 1420 Pfam ABC transporter 557 691 IPR003439 GO:0005524
Stsc30434g00005 1420 FunFam ABC transporter C family member 5 814 1151 - -
Stsc30434g00005 1420 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1170 1404 IPR003439 GO:0005524
Stsc30434g00005 1420 FunFam ABC transporter C family member 10 208 521 - -
Stsc30434g00005 1420 SUPERFAMILY ABC transporter transmembrane region 218 521 IPR036640 GO:0005524|GO:0016020
Stsc30434g00005 1420 CDD ABC_6TM_ABCC_D2 851 1145 IPR044726 GO:0140359
Stsc30434g00005 1420 FunFam ABC transporter C family member 5 524 771 - -
Stsc30434g00005 1420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1159 1401 IPR027417 -
Stsc30434g00005 1420 ProSitePatterns ABC transporters family signature. 664 678 IPR017871 GO:0005524|GO:0016887
Stsc30434g00005 1420 Pfam ABC transporter 1187 1335 IPR003439 GO:0005524
Stsc30434g00005 1420 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 146 1407 - -
Stsc30434g00005 1420 CDD ABCC_MRP_domain1 539 739 - -
Stsc30434g00005 1420 MobiDBLite consensus disorder prediction 788 825 - -
Stsc30434g00005 1420 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 853 1117 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30434g00005 1420 Gene3D - 1153 1406 IPR027417 -
Stsc30434g00005 1420 FunFam ABC transporter C family member 3 1153 1405 - -
Stsc30434g00005 1420 MobiDBLite consensus disorder prediction 793 825 - -
Stsc30434g00005 1420 SUPERFAMILY ABC transporter transmembrane region 851 1152 IPR036640 GO:0005524|GO:0016020
Stsc30434g00005 1420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 534 761 IPR027417 -
Stsc30434g00005 1420 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 539 762 IPR003439 GO:0005524
Stsc30434g00005 1420 CDD ABC_6TM_ABCC_D1 226 513 IPR044746 GO:0140359
Stsc30434g00005 1420 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 225 505 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30434g00005 1420 Gene3D ABC transporter type 1, transmembrane domain 814 1151 IPR036640 GO:0005524|GO:0016020
Stsc30434g00005 1420 Gene3D ABC transporter type 1, transmembrane domain 204 520 IPR036640 GO:0005524|GO:0016020
Stsc30434g00005 1420 Gene3D - 521 782 IPR027417 -
Stsc30434g00005 1420 SMART AAA_5 566 739 IPR003593 GO:0016887
Stsc30434g00005 1420 SMART AAA_5 1196 1381 IPR003593 GO:0016887
Stsc30434g00005 1420 CDD ABCC_MRP_domain2 1168 1388 - -
Stsc30434g00005 1420 Pfam ABC transporter transmembrane region 225 484 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc30434g00005 1420 Pfam ABC transporter transmembrane region 854 1109 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30434g00005 Stsc-Chr30434 20721 26130 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30434g00005 539 780 Calmodulin-binding Proteins AT2G36910 29.688 5.51e-26 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30434g00005 - K05666 aip:107606454 2368.96