Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30430g00006 ATGGGAAGTAGCAGCAGTGAAGAAGAGCTAATGAAAGCACTTTACCCTTTTATCCAAACTGTTTCTTCAAATAATTCCCCACCTTCTTCTTCTTCTTCCTCTTTCCTCTTCTCACCTTCTTCTTCTTCCATAGGCCTCAACAAACTCACCCCATCACAAATCATTCAAATCCAACTCCAATTCCAACTTCAACAGCAACAACTAATGTCTACCATGTCCATAGGCATGGACAGCAACCCAACCCAAAACCACCAATCCCTCAGCTTCCTCTCCCCAAAGAGGGTCCCCATGAAGCACGTGGCCACCACCCCAACCAAGGCCACAAAGCTTTACCGCGGTGTAAGGCAGAGACATTGGGGCAAGTGGGTGGCGGAGATCAGACTCCCCAAGAACAGAACCCGTCTCTGGCTGGGAACCTTCGACACCGCAGAGGAAGCAGCTTTGGCATACGATAACGCAGCTTACAAGCTTCGCGGTGAATTAGCACGCCTTAACTTCCCTCACCTTAAGCACCATGGCACCCGCGTATTCAGCGAGTTCGGTGAGTACAAGCCTCTCCCTTCGTCCGTGGATGCGAAGCTGCAAGCCATTTGTGACAACTTGGCTCTTTCTCATCAGAATCAGCAGGTGATCGAAACAGAGGAGGCATGTTCCTCTGTTGTGAAGGTGGAGGAGCAAGATGAGGTTGCAGCAGCAGAGCCTCAAGATCAAGTAGTGGATGATTGGAATGAATGGTGTTCCCCTGAATCGGGTTCGGGTGTGACCAATCTGTTTGATTTCTCGGATTATTGCAAGTGGGAGGAACCGGCGAGTTTTGGGCTGGAGAAGTTCCCTTCCGTGGAGATTGATTGGGCTGCCATATGA 864 0.5012 MGSSSSEEELMKALYPFIQTVSSNNSPPSSSSSSFLFSPSSSSIGLNKLTPSQIIQIQLQFQLQQQQLMSTMSIGMDSNPTQNHQSLSFLSPKRVPMKHVATTPTKATKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAYKLRGELARLNFPHLKHHGTRVFSEFGEYKPLPSSVDAKLQAICDNLALSHQNQQVIETEEACSSVVKVEEQDEVAAAEPQDQVVDDWNEWCSPESGSGVTNLFDFSDYCKWEEPASFGLEKFPSVEIDWAAI 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30430g00006 287 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 13 287 - -
Stsc30430g00006 287 SUPERFAMILY DNA-binding domain 110 168 IPR016177 GO:0003677
Stsc30430g00006 287 Pfam AP2 domain 111 160 IPR001471 GO:0003700|GO:0006355
Stsc30430g00006 287 SMART rav1_2 110 173 IPR001471 GO:0003700|GO:0006355
Stsc30430g00006 287 CDD AP2 109 169 IPR001471 GO:0003700|GO:0006355
Stsc30430g00006 287 ProSiteProfiles AP2/ERF domain profile. 110 167 IPR001471 GO:0003700|GO:0006355
Stsc30430g00006 287 Gene3D AP2/ERF domain 110 168 IPR036955 GO:0003700|GO:0006355
Stsc30430g00006 287 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700|GO:0006355
Stsc30430g00006 287 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Stsc30430g00006 287 FunFam Ethylene-responsive transcription factor 2 109 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30430g00006 Stsc-Chr30430 39810 40673 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30430g00006 7 287 AP2-EREBP Transcription Factor Family AT4G39780 48.936 6.08e-74 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc30430g00006 AP2 4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30430g00006 K09286 - gmx:100818839 250.366