Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30430g00004 ATGACGCAGCAGAATGTGGTTGTGGGCGCGGAGGACATGAAAAGGGCCCAAAAGCCACCCGCCATACCGGGAGGGTACATTCCCATCCCAAGGAGGAGTGTGTTGAAGAGCCTTGAAATCAACGGTCCTGAAAGGATCAATGCTTGGCTTGACTCTATGAGAGCATCCTCCCCTACTCATCCCAAATCCTCCACTCCTTCTCCTCACATATCTCAAGACCACTCCTCTTGGATTCTCAACCATCCATCCGCACTAGACATGTTTGACCAAATCATGGATGCATCAAAAGGAAAGAAAATCGTCATGTTCCTCGACTATGATGGCACTTTGTCACCCATAGTCGACGACCCCGATCGCGCTTTCATGTCCGATTCGATGAGAAAGACTGTGAGGAAGCTTGCAAGGTGTTTTCCTACTGCCATAGTTACGGGCAGATGCAGAGACAAGGTATATAACTTTGTTCGCTTGGCGGAGCTATACTATGCTGGTAGTCATGGCATGGATATAAAAGGCCCAACAAGAACCTCCAAATATAACAAAGACACCAAGGCAGACCCTGTTCTTTTTCAACCTGCCGCTGAATTTCTTCCTCTCATAGATGAGGTGTACCAAGAATTGGTTGAGAAAACGAAATCAACTCCCGGTGCCAGGGTGGAGAACAACAAGTTCTGTGTCTCTGTCCATTTTCGTTGTGTTGAGGAGAAGGAATGGGGTGAACTGGCACAACAAGTGAGATCAGTGTTAAAGAAGTACCCGAAGCTTCGTCTTAGCCAAGGGAGGAAGGTATTGGAGATTCGTCCTACTATTAAATGGGACAAAGGGAAGGCCCTCGAATTTTTGTTAGAGTCTCTCGGATTTGCCAACTGTAGTGATGTGTTTCCCGTTTACATTGGGGATGATAGAACCGATGAAGATGCATTCAAGAAGTTGAGAGACAGAGGACAAGGTTTAGGAATTCTTGTCTCGAAATTTCCCAAGGACACTAATGCATCCTACTCTTTGCAAGAACCTACTGAGGTTATGGACTTTCTTCAACGTTTAGTGGATTGGAAGAAAGAATCCCTCCGAGCACGTTCCAGGGTGTAA 1086 0.465 MTQQNVVVGAEDMKRAQKPPAIPGGYIPIPRRSVLKSLEINGPERINAWLDSMRASSPTHPKSSTPSPHISQDHSSWILNHPSALDMFDQIMDASKGKKIVMFLDYDGTLSPIVDDPDRAFMSDSMRKTVRKLARCFPTAIVTGRCRDKVYNFVRLAELYYAGSHGMDIKGPTRTSKYNKDTKADPVLFQPAAEFLPLIDEVYQELVEKTKSTPGARVENNKFCVSVHFRCVEEKEWGELAQQVRSVLKKYPKLRLSQGRKVLEIRPTIKWDKGKALEFLLESLGFANCSDVFPVYIGDDRTDEDAFKKLRDRGQGLGILVSKFPKDTNASYSLQEPTEVMDFLQRLVDWKKESLRARSRV 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30430g00004 361 NCBIfam trehalose-phosphatase 97 348 IPR003337 GO:0003824|GO:0005992
Stsc30430g00004 361 CDD HAD_TPP 101 341 - -
Stsc30430g00004 361 Gene3D - 100 188 IPR023214 -
Stsc30430g00004 361 Gene3D - 199 360 IPR023214 -
Stsc30430g00004 361 FunFam Trehalose 6-phosphate phosphatase 100 187 - -
Stsc30430g00004 361 SUPERFAMILY HAD-like 101 350 IPR036412 -
Stsc30430g00004 361 NCBIfam HAD-IIB family hydrolase 102 313 IPR006379 -
Stsc30430g00004 361 MobiDBLite consensus disorder prediction 54 75 - -
Stsc30430g00004 361 Pfam Trehalose-phosphatase 103 337 IPR003337 GO:0003824|GO:0005992
Stsc30430g00004 361 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 39 356 IPR044651 GO:0004805|GO:0005992
Stsc30430g00004 361 FunFam Trehalose 6-phosphate phosphatase 198 357 - -
Stsc30430g00004 361 FunFam Trehalose 6-phosphate phosphatase 192 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30430g00004 Stsc-Chr30430 19684 22290 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30430g00004 96 349 Trehalose Biosynthesis Gene Families AT1G60140 25.091 2.41e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30430g00004 K01087 - gmx:100794430 593.193