LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc30430g00004	ATGACGCAGCAGAATGTGGTTGTGGGCGCGGAGGACATGAAAAGGGCCCAAAAGCCACCCGCCATACCGGGAGGGTACATTCCCATCCCAAGGAGGAGTGTGTTGAAGAGCCTTGAAATCAACGGTCCTGAAAGGATCAATGCTTGGCTTGACTCTATGAGAGCATCCTCCCCTACTCATCCCAAATCCTCCACTCCTTCTCCTCACATATCTCAAGACCACTCCTCTTGGATTCTCAACCATCCATCCGCACTAGACATGTTTGACCAAATCATGGATGCATCAAAAGGAAAGAAAATCGTCATGTTCCTCGACTATGATGGCACTTTGTCACCCATAGTCGACGACCCCGATCGCGCTTTCATGTCCGATTCGATGAGAAAGACTGTGAGGAAGCTTGCAAGGTGTTTTCCTACTGCCATAGTTACGGGCAGATGCAGAGACAAGGTATATAACTTTGTTCGCTTGGCGGAGCTATACTATGCTGGTAGTCATGGCATGGATATAAAAGGCCCAACAAGAACCTCCAAATATAACAAAGACACCAAGGCAGACCCTGTTCTTTTTCAACCTGCCGCTGAATTTCTTCCTCTCATAGATGAGGTGTACCAAGAATTGGTTGAGAAAACGAAATCAACTCCCGGTGCCAGGGTGGAGAACAACAAGTTCTGTGTCTCTGTCCATTTTCGTTGTGTTGAGGAGAAGGAATGGGGTGAACTGGCACAACAAGTGAGATCAGTGTTAAAGAAGTACCCGAAGCTTCGTCTTAGCCAAGGGAGGAAGGTATTGGAGATTCGTCCTACTATTAAATGGGACAAAGGGAAGGCCCTCGAATTTTTGTTAGAGTCTCTCGGATTTGCCAACTGTAGTGATGTGTTTCCCGTTTACATTGGGGATGATAGAACCGATGAAGATGCATTCAAGAAGTTGAGAGACAGAGGACAAGGTTTAGGAATTCTTGTCTCGAAATTTCCCAAGGACACTAATGCATCCTACTCTTTGCAAGAACCTACTGAGGTTATGGACTTTCTTCAACGTTTAGTGGATTGGAAGAAAGAATCCCTCCGAGCACGTTCCAGGGTGTAA	1086	0.465	MTQQNVVVGAEDMKRAQKPPAIPGGYIPIPRRSVLKSLEINGPERINAWLDSMRASSPTHPKSSTPSPHISQDHSSWILNHPSALDMFDQIMDASKGKKIVMFLDYDGTLSPIVDDPDRAFMSDSMRKTVRKLARCFPTAIVTGRCRDKVYNFVRLAELYYAGSHGMDIKGPTRTSKYNKDTKADPVLFQPAAEFLPLIDEVYQELVEKTKSTPGARVENNKFCVSVHFRCVEEKEWGELAQQVRSVLKKYPKLRLSQGRKVLEIRPTIKWDKGKALEFLLESLGFANCSDVFPVYIGDDRTDEDAFKKLRDRGQGLGILVSKFPKDTNASYSLQEPTEVMDFLQRLVDWKKESLRARSRV	361

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc30430g00004	361	NCBIfam	trehalose-phosphatase	97	348	IPR003337	GO:0003824\|GO:0005992
	Stsc30430g00004	361	CDD	HAD_TPP	101	341	-	-
	Stsc30430g00004	361	Gene3D	-	100	188	IPR023214	-
	Stsc30430g00004	361	Gene3D	-	199	360	IPR023214	-
	Stsc30430g00004	361	FunFam	Trehalose 6-phosphate phosphatase	100	187	-	-
	Stsc30430g00004	361	SUPERFAMILY	HAD-like	101	350	IPR036412	-
	Stsc30430g00004	361	NCBIfam	HAD-IIB family hydrolase	102	313	IPR006379	-
	Stsc30430g00004	361	MobiDBLite	consensus disorder prediction	54	75	-	-
	Stsc30430g00004	361	Pfam	Trehalose-phosphatase	103	337	IPR003337	GO:0003824\|GO:0005992
	Stsc30430g00004	361	PANTHER	TREHALOSE 6-PHOSPHATE PHOSPHATASE	39	356	IPR044651	GO:0004805\|GO:0005992

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc30430g00004	Stsc-Chr30430	19684	22290	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc30430g00004	96	349	Trehalose Biosynthesis Gene Families	AT1G60140	25.091	2.41e-07	50.8

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc30430g00004	K01087		-	gmx:100794430	593.193

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