Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30427g00006 ATGAGGGATAGCAAGAAGTCAAAGAATAGAGGATTGCAAAAGTCCATTCATTCAAAGGCGAAAACTGAGTCAAAGCTAAATTCATCCTTGAGAGTCAAAACAAAGAGCACAAAGTGCCAAGGGAAGAAGCATAAGCTGAAATCAAAATCTCACACACAAAGAAAGGCATCTAACGTGTCGAGGAAGAGAGCTACTGATGCTTCCATCAAAGGGCCTAACAAGGAGCCTTCGAAAAAGAAATTGATTATTAGGTTTAGTTTGCATGAAACTGATGAAAAGTCTTCAACCAAGTTGTCTTCAAAATCAAAGCTAAAGGGCGAAAAGGTTTCTTTTAGTTCTAAAAAAGAGGGTAAAAATGTTGATGATGAGGTAAAGATTCAAAAGAGAAAGAGAAAGAGAAAAAAGAAAAGGCAGAGGAATAATGCAGATATTGATGATGCTTCTCGCCTCAAGAGGAGAACGAGATACCTATTAATCAAAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGCCAGAGTCGAGAAAAGATTAGGCCAGAAAAGGAGCTACAAAGAGCATGGAAGCAGATTTTAAAATGTAAACTTGGTATTCGTGATGCTATTCACCAGTTGGATTCTCTTAGTTCGTTGAATAGCAGTGAAGATTCTGTGATTGCTACAGATGAATCTAATTGCCATGAACATAAATACTGTCAGAAGTGCAAATCACAAGCTATTCGGGATAAGGATATTATACGATGTGATGGTACCTGCAATCGCACTTTTCACAAAAGATGTCTTGATCCTACCTTAACCACTGAAAATAAACATGGCTGGCTTTGCAAGTTTTGTGGATGTAAGATGGAAATACTGGGGGCATTGAATGCTCATCTTGGAACTCACTTCTCCTCGCACAGTACTTGGCAGGAAGAATGGCCATCAGATGATTCTGAAGATGATGATTATGATCCAGAGAGGAGAGAGGACTGCCACAACATCAACGCAGAAGGAAGCGATGATGATTTAAGCAGTTCTACCAGTTTATGTTCTTCAGATGGCGAATGTTCTCTAGTAGATGAAGGTTTCAACCATGAATATTCATCTCTTAATGGATGCATAGATTCTAATGAATCTGAGGAAAATGTCTGTGGCCCCAGACAGCGAAAAACAGTTGACTACAAGCAACTTTATGATGAAATGTTTGGGAAGGATGCTGCTGCATGTGAACAAGTGAGTGAAGATGAAGACTGGGATCCTATTAAAAGAAGGCGAAGAGACAAGGAGTCCGATGCTGTTGATACTCTTATGACTTTGCATGAATGCCAGAATAGAATTCACAACAGTGAGAACAACAACATGAAACGTGAAGATTCTCCGGGCAAACAAATCAAGAGATCTTGTTTTCGGATTCCTCGTGAAGCAGTTGAGAAGCTTCGCCAAGTCTTTGCAGAGAATGAACTTCCTCCAAGATCCAAGAAGTTGGCTCTCTCAAAAGAGTTGGGACTCAATATTGAGAAGGTTAGCAAATGGTTCAAAAATGCACGTTACTCAGCACTCAAAAGCAGAAAGCAACACACAGAGGGATCTGGTCCGCCTCAGACTTCTGATTCAAAGGATAACAGGTTACAAGACTCGGAGAGAGCTGAGGTTTCGAAACCAAAAGCATCAAAAAGTATTATTGATCATTCTCTGAAGAATTGTAAGGCTGTCAATGGTAGAAAGAAAAGACGACCAGAAGTATCTGCAAGTCAGCCAGAAAATAACAATAAGGACATGGAGGATGAGCTCAGTGATGATGTGTGTTTGATGAAACTGTTGAAAGATAAAAAGAAGAAAATGAACTCTGCATTTGAAGGGTACTCTCATACAGCAGAATTGGAATTTGAAAGACTAAGCAGAGTGAAGGATAAACTGGATAATTTGAGGAAAAAATTAACTGCAATTCTAAATTACAGGGAAAATTCTTCTAAGGCATCCCATTCTAATGAACCATCAATTATGTATGTGCCCACTGCTGTGTTAAGGGAAAAGGTTGCATAG 2040 0.3941 MRDSKKSKNRGLQKSIHSKAKTESKLNSSLRVKTKSTKCQGKKHKLKSKSHTQRKASNVSRKRATDASIKGPNKEPSKKKLIIRFSLHETDEKSSTKLSSKSKLKGEKVSFSSKKEGKNVDDEVKIQKRKRKRKKKRQRNNADIDDASRLKRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRAWKQILKCKLGIRDAIHQLDSLSSLNSSEDSVIATDESNCHEHKYCQKCKSQAIRDKDIIRCDGTCNRTFHKRCLDPTLTTENKHGWLCKFCGCKMEILGALNAHLGTHFSSHSTWQEEWPSDDSEDDDYDPERREDCHNINAEGSDDDLSSSTSLCSSDGECSLVDEGFNHEYSSLNGCIDSNESEENVCGPRQRKTVDYKQLYDEMFGKDAAACEQVSEDEDWDPIKRRRRDKESDAVDTLMTLHECQNRIHNSENNNMKREDSPGKQIKRSCFRIPREAVEKLRQVFAENELPPRSKKLALSKELGLNIEKVSKWFKNARYSALKSRKQHTEGSGPPQTSDSKDNRLQDSERAEVSKPKASKSIIDHSLKNCKAVNGRKKRRPEVSASQPENNNKDMEDELSDDVCLMKLLKDKKKKMNSAFEGYSHTAELEFERLSRVKDKLDNLRKKLTAILNYRENSSKASHSNEPSIMYVPTAVLREKVA 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30427g00006 679 Coils Coil 624 644 - -
Stsc30427g00006 679 Gene3D - 463 528 - -
Stsc30427g00006 679 ProSitePatterns Zinc finger C2H2 type domain signature. 281 301 IPR013087 -
Stsc30427g00006 679 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 291 IPR013083 -
Stsc30427g00006 679 SMART HOX_1 461 525 IPR001356 GO:0003677
Stsc30427g00006 679 Pfam Homeodomain 471 516 IPR001356 GO:0003677
Stsc30427g00006 679 ProSitePatterns Zinc finger PHD-type signature. 238 284 IPR019786 -
Stsc30427g00006 679 MobiDBLite consensus disorder prediction 307 345 - -
Stsc30427g00006 679 CDD homeodomain 469 525 IPR001356 GO:0003677
Stsc30427g00006 679 ProSiteProfiles 'Homeobox' domain profile. 461 521 IPR001356 GO:0003677
Stsc30427g00006 679 MobiDBLite consensus disorder prediction 1 147 - -
Stsc30427g00006 679 ProSiteProfiles Zinc finger PHD-type profile. 235 287 IPR019787 -
Stsc30427g00006 679 SMART PHD_3 237 285 IPR001965 -
Stsc30427g00006 679 MobiDBLite consensus disorder prediction 539 561 - -
Stsc30427g00006 679 FunFam pathogenesis-related homeodomain protein 463 527 - -
Stsc30427g00006 679 MobiDBLite consensus disorder prediction 36 58 - -
Stsc30427g00006 679 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 15 677 - -
Stsc30427g00006 679 SUPERFAMILY FYVE/PHD zinc finger 228 289 IPR011011 -
Stsc30427g00006 679 MobiDBLite consensus disorder prediction 520 595 - -
Stsc30427g00006 679 MobiDBLite consensus disorder prediction 1 28 - -
Stsc30427g00006 679 Pfam PHD-finger 237 286 IPR019787 -
Stsc30427g00006 679 SUPERFAMILY Homeodomain-like 464 530 IPR009057 -
Stsc30427g00006 679 MobiDBLite consensus disorder prediction 523 538 - -
Stsc30427g00006 679 MobiDBLite consensus disorder prediction 67 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30427g00006 Stsc-Chr30427 22155 26143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30427g00006 140 523 Homeobox Transcription Factor Family AT4G29940 51.415 1.31e-123 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Stsc30427g00006 Homeodomain 1.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30427g00006 - - gmx:100787118 709.909