Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30427g00003 ATGTCGTCGTGTCTAAGTGGAGCTGGCGGACGAACCTATGGTTTCGATTTCGAATTCGTTAAGTCCACATCGTCTCCGTCCATCACCAGAACTTCACATACTTCATCTTCATCACCATCTTCAACCATCTCCGAATCCAGCAACAACACGCAGCTTGCAATCTCAACGCGTAAGCCAAGAACCGCAAGGAAGCGCCCCAACCAAATCTACAACGAAGCCGCGGCGCTTCTCTCCACCGCATACCCCAACCTCTTCTCATCCAACACGCTCAAAAGCTTCGCCAAACCATCCTCCCAATACGGCAACAGTAACATTTCCAATACGGCGTCGTTTTTGGACGACTCGTCGGAGGAGGTGTTCTTGCCGTTCAGGGTGTTCGATACGTCGTCGTCGTTCCTGCTCCACCAGTACAAGCCGTCTCCGCCGAAGGCGGTGAGTGTGCAGCACGAGAAGCCATGTCAGAGCCCAGGGGAAATAAGCTCCAGGGTGAATTCATTGGAATTGGAGGACCATAACAATAACAACCATTGCGGCGGCGGAGAAGACGATTTCGATGCGGAATCGATGCTCGACGAGGAAATCGAGGAGGGAATCGATAGCATCATGGGGAGCGGGGTCGAATTGGAATCATCCTCCATTGATGCGGCTTCTTCGGATAATAATCCGTGGAGTTCTTTTGGCGGGAAACTGGATTTCCGGCTAGGGTTGCGGAGGGCCGGCGTGAGGGCACTCCGCAGCGCCGACGACGGTAATTGGTGGAATTTCCCGGCGGTTGATATCCTCCAGATATCGCCTAAGGTTGTAAGCAGCATTAACAAGGCTGCGCCGCAACAACCGGTGGCTGCGGCGGCGGAAAAGGCGAAGAAGAAAAAGAAGAAGGTGGAGAAACCGAGCGTTGAAGTGAAGAACAAGATTGATGAATCGCCGAAGGTGAATAATAGTGAAGCCGCTGTTCCGGCGAAATTGAATTCCGGATTGATGTTGAAATTGAATTACGACGGTGTAAGGGATAGTTGGTCCGACAGGGGCTCGCCGTTCGGCGATGACGTCTCAGCCTCCGACTTGCCGGGAAATGACCTCACCGCACGGTTGTCACAAATAGATTTGTTATGGGAGAACGGGGGAGTGAGAGAGGCTAGCGTGCTTCGCTACAAAGAAAAGCGGCGTACACGCCTCTTCTCCAAGAAGATCAGGTACCAAGTCAGGAAGGTCAACGCTGATCGACGGCCCAGAATGCAGGTACGACCCAGCTGA 1254 0.5303 MSSCLSGAGGRTYGFDFEFVKSTSSPSITRTSHTSSSSPSSTISESSNNTQLAISTRKPRTARKRPNQIYNEAAALLSTAYPNLFSSNTLKSFAKPSSQYGNSNISNTASFLDDSSEEVFLPFRVFDTSSSFLLHQYKPSPPKAVSVQHEKPCQSPGEISSRVNSLELEDHNNNNHCGGGEDDFDAESMLDEEIEEGIDSIMGSGVELESSSIDAASSDNNPWSSFGGKLDFRLGLRRAGVRALRSADDGNWWNFPAVDILQISPKVVSSINKAAPQQPVAAAAEKAKKKKKKVEKPSVEVKNKIDESPKVNNSEAAVPAKLNSGLMLKLNYDGVRDSWSDRGSPFGDDVSASDLPGNDLTARLSQIDLLWENGGVREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMQVRPS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30427g00003 417 MobiDBLite consensus disorder prediction 283 312 - -
Stsc30427g00003 417 ProSiteProfiles CCT domain profile. 377 417 IPR010402 GO:0005515
Stsc30427g00003 417 MobiDBLite consensus disorder prediction 294 309 - -
Stsc30427g00003 417 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 415 - -
Stsc30427g00003 417 MobiDBLite consensus disorder prediction 23 57 - -
Stsc30427g00003 417 Pfam CCT motif 377 415 IPR010402 GO:0005515
Stsc30427g00003 417 MobiDBLite consensus disorder prediction 23 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30427g00003 Stsc-Chr30427 16662 18567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30427g00003 326 415 C2C2-CO-like Transcription Factor Family AT1G25440 43.243 8.61e-17 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc30427g00003 CCT 6.7e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30427g00003 - - adu:107496352 619.002