Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30427g00002 ATGGTGAAATTATTTGCCTTTCTGGTTAACCACCGCAATGGACGTATTGCATTATATCAAAACCTTTATGTGTGTTTTGAGGGGATTCAACCCAAGTATCATGCTAGCGCCCGTTTCAATCTTGTTGACATTGGCAACGGAAAGCTGTGTGCAATACTATGCACAAAAAAAGTTGGAAGAGGACCCAATTTTTCTTTCTCAGTAATGCTTAGCATCTCAGTTTTCACATTGTCCCTGGTGAAGGACTTGCCGGACTTGAAGCTTCTGGTTTCTCCCATGAAGAAAGATTTTTTAGAAGTGACTTCCCTTAAGAAGAGTGTCTACACCATCAATGACGCGAGGATGTCTAACATTGTGAGCCACACCTTTGTTTGGCCACCTACCAAGGAAGAAGTGTTTCAGCATAGGGGAATTCTACTCGCCTCTCCCGTCGCGGCATCGTGTCCGGCGAGAAAAGAAGAGCACGTTGCTCTTTCCGAATCAAAACCCCCAAACCCTAATCAAATGGCGCACCGATTGCTGAGGGACCATGAAGCCGACGGGTGGGAGCGCGCCGACTTCCCCATCATCTGCGAGTCCTGCCTTGGCGACAACCCTTACGTTCGCATGACAAGAGCTGAGTATGACAAGGAATGTAAGATTTGTACACGGCCATTTACTGTCTTTAGATGGAGACCTGGTCGAGATGCAAGGTATAAGAAGACTGAGATCTGCCAGACATGTAGTAAGTTGAAAAATGTCTGTCAAGCTAGAGCTGGTATAGATTATGAATCTTCTTATGGTAAAGCACGCCCAAATGACACTATCTTGAAGCTTCAAAGGACAACACCATATTACAAAAGAAACCGGGCACATATTTGCAGTTTCTACATAAGGGGTGAATGTACTAGAGGAGCTGAATGCCCTTATAGGCACGAGATGCCAGTAACTGGGGAGCTATCTCAACAAAATATTAAAGATCGTTATTATGGTGTCAACGATCCTGTGGCTTTGAAGCTACTTGGTAAGGCTGGAGAAATGACTTCTTTGGAGGCTCCTGAGGATGAGAGCATCAAAACACTTTATGTCGGTGGACTTGATGCTAGGGTCACTGAGCAGGACTTGCGGGATCACTTCTATGCGCACGGTGAAATTGAATCTATCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTTACCTATACAACCAGAGAAGGTGCAGAAAAGGCAGCTGAAGAACTATCCAACAAGCTGGTTATTAAGGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCACAGACAGCAAAATCGGAGTCAGATGGCTCTGATCAAGCAAGGCAGCAAGCAGCAGTGGCTCACAGTGGGTTGTTGCCTCGGGCAGTTATATCGCAACAGCAGAATCAGGATCAAGGGCAAGGAGTGCCTTACTATAACAATCCACCTCCTCCTCAGCAAGAAAGAAGCTATTACCCATCAATGGATCCACAAAGAATGGGTGCTCTTATTCCATCTCAAGAGGGTCCTCCAGGTGGACCTAGTGGATCAGGTGAGAACAAACCCAATATGGAGAAGCCACAAATGCAACACTATGCCCATCCAATGATGCCTCCTCCTCCTCCTGGCCAATATCATCATCCTCCTCCTCCTCATCAGTATTATCCTCCTCCATATGGTTATATGCCACCAGTTCGCCCGTATCAGCAATACCCACCACCATATAGTGCTCAAATGGCGCCATCTCAGCCACCAGCTGCAAATCATCCATATCACCATCATCCCATGCACCCCGGTTCTTCACAAGCAGGGTCTGGACAGGTTGGCTCTGGATCTGCGCCAACTGAAGCTGGAGCATCAGCATCAGGGTCACAGCAGCAGTGA 1857 0.4712 MVKLFAFLVNHRNGRIALYQNLYVCFEGIQPKYHASARFNLVDIGNGKLCAILCTKKVGRGPNFSFSVMLSISVFTLSLVKDLPDLKLLVSPMKKDFLEVTSLKKSVYTINDARMSNIVSHTFVWPPTKEEVFQHRGILLASPVAASCPARKEEHVALSESKPPNPNQMAHRLLRDHEADGWERADFPIICESCLGDNPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMTSLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTAKSESDGSDQARQQAAVAHSGLLPRAVISQQQNQDQGQGVPYYNNPPPPQQERSYYPSMDPQRMGALIPSQEGPPGGPSGSGENKPNMEKPQMQHYAHPMMPPPPPGQYHHPPPPHQYYPPPYGYMPPVRPYQQYPPPYSAQMAPSQPPAANHPYHHHPMHPGSSQAGSGQVGSGSAPTEAGASASGSQQQ 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30427g00002 618 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 352 425 IPR000504 GO:0003723
Stsc30427g00002 618 Gene3D - 336 435 IPR012677 -
Stsc30427g00002 618 FunFam Zinc finger CCCH domain-containing protein 40 337 433 - -
Stsc30427g00002 618 CDD RRM_RBM22 351 424 - -
Stsc30427g00002 618 MobiDBLite consensus disorder prediction 425 445 - -
Stsc30427g00002 618 Gene3D - 272 332 - -
Stsc30427g00002 618 ProSiteProfiles Zinc finger C3H1-type profile. 281 308 IPR000571 GO:0046872
Stsc30427g00002 618 SUPERFAMILY CCCH zinc finger 283 306 IPR036855 GO:0046872
Stsc30427g00002 618 MobiDBLite consensus disorder prediction 428 442 - -
Stsc30427g00002 618 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 354 412 IPR000504 GO:0003723
Stsc30427g00002 618 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 250 500 IPR039171 GO:0003723
Stsc30427g00002 618 SMART rrm1_1 353 421 IPR000504 GO:0003723
Stsc30427g00002 618 MobiDBLite consensus disorder prediction 591 618 - -
Stsc30427g00002 618 SMART c3hfinal6 281 307 IPR000571 GO:0046872
Stsc30427g00002 618 MobiDBLite consensus disorder prediction 524 562 - -
Stsc30427g00002 618 SUPERFAMILY RNA-binding domain, RBD 345 432 IPR035979 GO:0003676
Stsc30427g00002 618 MobiDBLite consensus disorder prediction 457 618 - -
Stsc30427g00002 618 FunFam Zinc finger CCCH domain-containing protein 4 273 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30427g00002 Stsc-Chr30427 5297 10805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30427g00002 353 573 Eukaryotic Initiation Factors Gene Family AT2G23350 27.823 4.88e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30427g00002 K12872 - gmx:100779917 662.529