Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30426g00002 ATGCTCCAATGTGAGGCGCCGCTCAGGCACAGCCATAGCCGTACAAACATAACCAGTAGGGCTGACGTCATTCAAGGCACCCCACTCACACGTCTCATCACCCGGCGGCTCTCTCCGTGGGGCCCACCCTATCTTGAACCAGAGCCCTTGGATCACAGACATCAACCATCAACGGCTCACAATAAAAAACTAACCATTTTATCCAAATCAAAAACTTGCATTATTATGGTGTATATAAGCAAAAGCAAAAACCAGAGCACAATAGTAGTAAAAAAGAAAAGGAAGGGGGGGTCGTGCCGGCTAGCCGTCGATTACGGGAGACCTGAGCGGGTCCCTCCACTCTCATATCTTCTTTCTTCTTCTTCTTCTCTTGAGCTTTGTTTTTGTTGTTCAAGAATGGCATCTTCTTCTTCTTCCTCAGCTTCAGCTACTCGTGAGGGACATTACAGAGGGGTTAGGAAGAGGCCATGGGGACGTTACGCTGCTGAGATACGCGATCCATGGAAGAAGACACGTGTATGGCTTGGTACATTCGATACTCCTGAAGAAGCCGCCCTAGCTTACGACGGTGCAGCGCGTTCTCTCCGTGGTGCTAAGGCCAAGACTAACTTTCCTCCAGCTCCGCTGCCTCCAGGAATCTGCCTCGATCTCAACGTCAACGTCAATGCTCCTAACTCTGATCACCATCGCTGGCCAATGCCATCCGTGCCTGTCCGCGCCGGCGTCGGCGGTGGTGGTGGAATCTTCGGCGAGTTTCTCCACACTCGCGTTCTGAAGGACGTTGATCCGGCTCATCATCAACCGCATCATCCGGTGCCGCCGCCTCATCCGATGCATCATGCGGCGGCGTTAGCAGGTCATCATCACAGACGCGGCGAAGTGACGGTAGCTGTTTCCGGAGGTGTTGGAATGGAGCAGGTGGCAGCAGGGAGTGGATCAACGGCGTCGTATCTAGGGCTTGTTCGGCGCGGAATCCCGATCGATCTGAACGAACCACCACCTTTGTGGCTTTGA 1014 0.5335 MLQCEAPLRHSHSRTNITSRADVIQGTPLTRLITRRLSPWGPPYLEPEPLDHRHQPSTAHNKKLTILSKSKTCIIMVYISKSKNQSTIVVKKKRKGGSCRLAVDYGRPERVPPLSYLLSSSSSLELCFCCSRMASSSSSSASATREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPPAPLPPGICLDLNVNVNAPNSDHHRWPMPSVPVRAGVGGGGGIFGEFLHTRVLKDVDPAHHQPHHPVPPPHPMHHAAALAGHHHRRGEVTVAVSGGVGMEQVAAGSGSTASYLGLVRRGIPIDLNEPPPLWL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30426g00002 337 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 123 235 - -
Stsc30426g00002 337 SUPERFAMILY DNA-binding domain 148 205 IPR016177 GO:0003677
Stsc30426g00002 337 Pfam AP2 domain 148 197 IPR001471 GO:0003700|GO:0006355
Stsc30426g00002 337 CDD AP2 148 207 IPR001471 GO:0003700|GO:0006355
Stsc30426g00002 337 PRINTS Ethylene responsive element binding protein signature 149 160 IPR001471 GO:0003700|GO:0006355
Stsc30426g00002 337 PRINTS Ethylene responsive element binding protein signature 171 187 IPR001471 GO:0003700|GO:0006355
Stsc30426g00002 337 ProSiteProfiles AP2/ERF domain profile. 148 205 IPR001471 GO:0003700|GO:0006355
Stsc30426g00002 337 SMART rav1_2 148 211 IPR001471 GO:0003700|GO:0006355
Stsc30426g00002 337 FunFam Ethylene-responsive transcription factor 2 148 206 - -
Stsc30426g00002 337 Gene3D AP2/ERF domain 148 206 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30426g00002 Stsc-Chr30426 4540 5937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30426g00002 139 337 AP2-EREBP Transcription Factor Family AT1G28360 45.714 2.87e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc30426g00002 AP2 8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30426g00002 - - aip:107624305 290.041