Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30425g00005 ATGTCCTCCGAAGACATAGGTCTCGTACCCGACCAGAGGATCGAAACCGGTCTCAACTCCTCACTCGTTTTCCAAGACGAACCCTTGCGCTTCAGCTGCGGGGGCCCGCAGCGTCGGGTCGGGGACCCGGGCCCGAAAACCCGGGATCTTGGTGGCTTCATCGATGACAAGATGTTCTCCATGGATCGCGACCGGTACTTCGCCGCACAAGGCTCCGAGTTCCGCCGGAGCGTCTACGGCGACTGCTCTGGCCGCCGTGATCCGCCTGGCACTCGCAATTGGAGTAGGAACGGGGGCGCTAATACTCCCAGCGGTGACGAATCCGACGGGGATGATGACGAAGATGATGATGACGATGACGACGACGATGACGATGTCGAAGGTAATGAAGGGCTTGTTGGTGTTGGTGATGGAAGCAAGCGCAATTTGAACGCCATTGTTGATATTAACGGTAGCAGCGGTGGTAATTTGGGTGGTGTTAGTGTTGCTGAGCGGATGGCAAATGGGAAAGGACAGCATCATTCCTCTTACGTTTCCAGTAGAGAAATGTTGGGAAAGGATGGGGATATGGGGCAGCTGGTGCATAACAATGCGAGTGGTACCGATGAGGATCATCATCAGAGAGAGAGATTGGGTAAATCACAGAGTTCTGTAACCATTGCTGAAACTGATTGTGATGAGTACTATTCACATTATCTTCATGGCACCGAAGGATCGGGTTCTGTGCAGAAAGTTATGGTGGATGAGAATGGTTGTGGGTTTAGTGGAAGAAAGGATGTTCTTTATTCAAGCGAGTCAGGGGAATCGTTGAGGGCAATTCTTTCAGATCCTGTTACAGGTTCACTTATGGATGATGCCATGATATTACCTTGCGGGCATTCATTTGGTGGAGGTGGAATACAGCATGTTATTAGAATGAAAGCTTGCTGCACCTGTTCTCAACCCACATCTGAGGAATCAATATCTCCAAATCTATCACTTCGAGCTGCTGTGCAGGCATACCGCCGTGAAGAGGAATCACAATTTTATCGGTCATCTAAAAGACGAAGAGAGAGATTTGATCAGGGTGGTTTTGGAGATTCAGCTGTTGTAGAGCCACCAAGGGGCAGAGGTGTTCAATTTCCATTTGCTGTGATGGACCGTGTTATCATAAAGGGAAACAAAAGGACACCGCAACGGTTTGTTGGGCGTGAAGCTATTGTAACAACACAATGCCTTAATGGATGGTATGTGGTAAAGACATTGGACAATGCAGAGAGTGTGAAATTACAGTATCGTTCCCTTGCTAAGGTTTTGGATGATTCTTCAAAACCTGCCTCCACCAAGATTCCAGCTAATTGGCGTTAG 1347 0.49 MSSEDIGLVPDQRIETGLNSSLVFQDEPLRFSCGGPQRRVGDPGPKTRDLGGFIDDKMFSMDRDRYFAAQGSEFRRSVYGDCSGRRDPPGTRNWSRNGGANTPSGDESDGDDDEDDDDDDDDDDDVEGNEGLVGVGDGSKRNLNAIVDINGSSGGNLGGVSVAERMANGKGQHHSSYVSSREMLGKDGDMGQLVHNNASGTDEDHHQRERLGKSQSSVTIAETDCDEYYSHYLHGTEGSGSVQKVMVDENGCGFSGRKDVLYSSESGESLRAILSDPVTGSLMDDAMILPCGHSFGGGGIQHVIRMKACCTCSQPTSEESISPNLSLRAAVQAYRREEESQFYRSSKRRRERFDQGGFGDSAVVEPPRGRGVQFPFAVMDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVLDDSSKPASTKIPANWR 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30425g00005 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 339 IPR013083 -
Stsc30425g00005 448 MobiDBLite consensus disorder prediction 78 139 - -
Stsc30425g00005 448 MobiDBLite consensus disorder prediction 106 130 - -
Stsc30425g00005 448 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 7 442 - -
Stsc30425g00005 448 MobiDBLite consensus disorder prediction 32 54 - -
Stsc30425g00005 448 ProSiteProfiles U-box domain profile. 269 341 IPR003613 GO:0004842|GO:0016567
Stsc30425g00005 448 MobiDBLite consensus disorder prediction 196 218 - -
Stsc30425g00005 448 SUPERFAMILY RING/U-box 268 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30425g00005 Stsc-Chr30425 47790 51416 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30425g00005 214 447 Plant U-box Gene Family AT5G05230 59.751 3.66e-88 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30425g00005 - - pcin:129302449 606.29