Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30423g00010 ATGGATTCACCAGTGACCCTTTTGATTAAGCACCTTCCTGAAGCTATACCTCTTGACACCCTTTCTCGGCTCTTATCTCATTATGGTGCTTCTTCTGTTCGTCCTTGCCTTACTGGAAGGTTGAGGAATTGTGCTTTTGTGGATTTCAAAAATGAAATGCTGGCATCTCAAGCACAACGTCAACTAAATGGGTTGAGGCTTCTTGGTAAAGTCTTGTCAGTAGAGAGAGCTAATAATCCAATGGAGAGTGGCAAAAAAGGCAGTGTAGCTCAGCCTGGAAAGGACTCTAAAACAACCATGGATAAAGATACAACTGTAACCAAAGCTATTGATGGAGATACAAAATCAGGATGCTTCCCTGTTGCTGAGCCAATTGCTGAAAGACTTGGTGTCGACTATCCATTTCCACCTCACCTTACGTATGCTTACCCTCCACCAGATGGAAATATATTGACCAACATTGTCAATGCTCTGATTGCTGTTCCCCGATTTTACACTCAGGTTCTACACTTAATGAACAAAATGAACATTCCAGCTCCATTTCGTATGGCATTGCCAACACCGCCATTACCTCCAGCGGTGCCAGCCCCACCACCTCCCCCTCCTCCTGTACCTGTGAAGCCTCAGTCTGCAGATCTGTCAAGTGGTGAATCAGAGATGGAATCTTCGGAAGAGGAGGTAGGGCCAACAACAGAAAAGCCTAAGAAGAAGCGTGCCAGGCGCGAGACAATTATTGGCCCTGCCATTGATAAAGATATCGCTCATGAGGATGTTGGAGTAAAACCAGCTACCTTAGTCCCAAAAGAAATCCCATTAATAAAAAAGAAGAACCCTGTGTTGCAGATCAATATTGCTCCCAAAGAAAGTAAGGATGAGCATAAAAATGATGACACAAGACAAGATTTACAGGAGCCAGAAAAAGATAGTCCTGATCCACATAAATTTTTAACTCCAGAAGAATTGGAGAGAGGAAAGTTGCCTCCTGAGGAAATATTATCTCTTCCAATGTTTAAGAACTATACCACTGGAAATCCGGCTCCTGTGTTGTATATTAAGAATTTGGCTAAAGATGTGGCTGGTGAAGATTTTTTTACCATATTCGGGTACTTGTTTGGAAGTATTGAGGCTGCCAAGTCTTGTCTTCATATAAAACTGATGCAGGAAGGAAGGATGAGAGGTCAAGCATTTTTAACATTCCCATCAATTGAGCTAGCTCATCAGGGCCTGAATCTAGTGAATGGATATGTATTTAAAGGCAAGCCAATGATAATTCAGTTTGGTCGGAATCCTGGTGCCGCTAAAGGAACTTGA 1311 0.4272 MDSPVTLLIKHLPEAIPLDTLSRLLSHYGASSVRPCLTGRLRNCAFVDFKNEMLASQAQRQLNGLRLLGKVLSVERANNPMESGKKGSVAQPGKDSKTTMDKDTTVTKAIDGDTKSGCFPVAEPIAERLGVDYPFPPHLTYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPPAVPAPPPPPPPVPVKPQSADLSSGESEMESSEEEVGPTTEKPKKKRARRETIIGPAIDKDIAHEDVGVKPATLVPKEIPLIKKKNPVLQINIAPKESKDEHKNDDTRQDLQEPEKDSPDPHKFLTPEELERGKLPPEEILSLPMFKNYTTGNPAPVLYIKNLAKDVAGEDFFTIFGYLFGSIEAAKSCLHIKLMQEGRMRGQAFLTFPSIELAHQGLNLVNGYVFKGKPMIIQFGRNPGAAKGT 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30423g00010 436 MobiDBLite consensus disorder prediction 286 322 - -
Stsc30423g00010 436 FunFam U11/U12 small nuclear ribonucleoprotein 65 kDa protein 342 436 - -
Stsc30423g00010 436 MobiDBLite consensus disorder prediction 226 248 - -
Stsc30423g00010 436 MobiDBLite consensus disorder prediction 284 322 - -
Stsc30423g00010 436 MobiDBLite consensus disorder prediction 79 100 - -
Stsc30423g00010 436 SMART rrm1_1 348 425 IPR000504 GO:0003723
Stsc30423g00010 436 SMART rrm1_1 6 75 IPR000504 GO:0003723
Stsc30423g00010 436 Gene3D - 2 107 IPR012677 -
Stsc30423g00010 436 MobiDBLite consensus disorder prediction 192 208 - -
Stsc30423g00010 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 5 79 IPR000504 GO:0003723
Stsc30423g00010 436 Gene3D - 342 435 IPR012677 -
Stsc30423g00010 436 PANTHER UNCHARACTERIZED 4 432 IPR045164 -
Stsc30423g00010 436 MobiDBLite consensus disorder prediction 192 248 - -
Stsc30423g00010 436 CDD RRM2_RBM40_like 348 427 - -
Stsc30423g00010 436 SUPERFAMILY RNA-binding domain, RBD 5 430 IPR035979 GO:0003676
Stsc30423g00010 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 347 429 IPR000504 GO:0003723
Stsc30423g00010 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 72 IPR000504 GO:0003723
Stsc30423g00010 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 349 421 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30423g00010 Stsc-Chr30423 53127 59762 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30423g00010 349 425 Eukaryotic Initiation Factors Gene Family AT3G16380 32.468 1.06e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30423g00010 K13157 - gmx:100818499 623.239