Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30423g00007 ATGGAAGAGCCAGTTGTGGTTAACAAAGGCGAGGAGCCTCTAGATTTGCCGCCGGGTTTCAGGTTCCACCCGACTGATGAAGAAATCATCACTTGTTACCTGACGGAGAAGGTCATGAACAGCAGCTTCAGTGCAACTGCCATAGGGGAAGCCGATTTAAACAAATCCGAACCTTGGGATTTACCAAAGAAAGCGAAGATGGGGGAGAAAGAGTGGTACTTCTTTTGTCAGAAAGACAGAAAATACCCGACAGGGATGAGGACGAATAGAGCCACGGATTCCGGTTACTGGAAGGCAACCGGAAAAGACAAGGAGATTTTCAAAGGGAAAGGGAATCTTGTTGGGATGAAGAAGACGCTTGTGTTCTACAGAGGTAGAGCTCCCAAGGGTGAAAAGACCAATTGGGTCATGCATGAGTTCAGATTAGAAGGAAAATTTGCTAATTATAACCTCCCCAAGGCTGCAAAGGATGAATGGGTTGTGTCAAGGGTTTTTCACAAGAACACAGATGTAAAGAAGACTACAACTACAACTACCCCATCATCATCATCAACAATAATTCCTGGGCTACTGAGGATGAACTCAATAGGTGATGATCTTCTAGATTGTTCCACACTACCTCCTCTCATGGACCCTCACCCTCACCCATCATCTGGCGATGAATTCAAAGGCGTCATCAACAACCCTCTAAAATCAGACGGCTATTATTTCCCCACCTTCTCATCATCACTCAACAACAGCCATCAGATCCTCATCAAGCCTGAAGAACAACAACACAATAATAGAAGCAACCAAATCGCCGTCACCAATTACCAGATTCCCAATTTCAACAACACACTCTCTTCTCATCACCACCACAATTTGTTCTCATCATCATCATTAGATAATAATAATAATAATAATTACCAAAGCTCGTGGCCCAGTTATTATGGGGTCGACAACATCAACAATCTGAGCCATCATCAAAGTAGTCATAATCATCATCAACAACATGATGATATGCTACTAAGAGCAATCGCATCAAAGAATTATAACAACGGCGGCGAGTGCAAGGTGGAGCAGTTCTCGTCCGGCAACCAATCGGTAGTGAGCGTTTCGCAAGAGACGGGGCTGAGCAACGACAGAAACACAAATGACACGTCATCGGTGGTTTCAAAGCAGCAGCATAATAATAACAATAGCAAGACATTGTACGAGGATCTTGAAGGTCCTTCTTCATCAGTTGCACCTCTCTCCGATTTGGAATGCTTGTGGGATGCCTACTGA 1266 0.4423 MEEPVVVNKGEEPLDLPPGFRFHPTDEEIITCYLTEKVMNSSFSATAIGEADLNKSEPWDLPKKAKMGEKEWYFFCQKDRKYPTGMRTNRATDSGYWKATGKDKEIFKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLEGKFANYNLPKAAKDEWVVSRVFHKNTDVKKTTTTTTPSSSSTIIPGLLRMNSIGDDLLDCSTLPPLMDPHPHPSSGDEFKGVINNPLKSDGYYFPTFSSSLNNSHQILIKPEEQQHNNRSNQIAVTNYQIPNFNNTLSSHHHHNLFSSSSLDNNNNNNYQSSWPSYYGVDNINNLSHHQSSHNHHQQHDDMLLRAIASKNYNNGGECKVEQFSSGNQSVVSVSQETGLSNDRNTNDTSSVVSKQQHNNNNSKTLYEDLEGPSSSVAPLSDLECLWDAY 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30423g00007 421 MobiDBLite consensus disorder prediction 355 406 - -
Stsc30423g00007 421 MobiDBLite consensus disorder prediction 355 401 - -
Stsc30423g00007 421 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Stsc30423g00007 421 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 319 - -
Stsc30423g00007 421 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Stsc30423g00007 421 SUPERFAMILY NAC domain 13 168 IPR036093 GO:0003677|GO:0006355
Stsc30423g00007 421 FunFam NAC domain-containing protein 100-like 25 171 - -
Stsc30423g00007 421 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30423g00007 Stsc-Chr30423 36270 38711 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30423g00007 1 401 NAC Transcription Factor Family AT5G18270 49.517 8.26e-114 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc30423g00007 NAM 5.6e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30423g00007 - - gmx:100784372 505.368