Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30421g00005 ATGGGACACAGCTCCAAGAAGAAGAAGCGCGGCGGCGGTGGTGGCAGGAGCAAGGGAAGAGCTCCTTCCAAAGATCACACTTCTCAATCCGCCAACGATGATACCGAACTGTCCGAAGAGATCACAGCTCTATGTGCTATTTTTCAAGAAGATTGCAAGGTTCTTCTTGGCTCACCTCCTCAAATAAGTATCAAGCTCAGGCCTTACTCTAAGGACATGGGTTATGAAGACTTGGATGTTTCTGCTATTCTTCACGTCAGATGCTTACCCGGGTATCCCTTCAAGTGTCCCAAGCTGCAGATTACTCCCGAGGATGGCTTATCCGAGAGTGACGCTGATAAACTATTGTCACTTCTCCACGATCAGGCTACTTTGAATGCTAGGGAGGGTCGAGTAATGATCTTTAACTTGGTTGAGGCTGCTCAAGAATTTCTGTCGGGAATCGAGCCAATTGCAAAACCAATTGAATCTAAGCTTTTGCACTCAACAGAGGAAAGCAACGAAGAATTGTTTCCCAAGGATATGGTATTGTCTAACCAAAATATAGTTTATGTCCATGGTCTTATAGACCTGTTCAGTGATTATGGAGAGTCATGGGATTGGGGTATTGGAATGGATGTAACTGCCGAAAAAAGTTCTCCTCTTCCTCCCTCTAAGTTAGAAGCCTCAAAACATGATTCTGAGACCCGTGAAAAGAATTCTGATAGTAAGGAAAAACTATTAATAAAACAAGATATCCTTGCCAAATTAGATACTGTTGGGGAAGTAAGTGAAGATGGCAATAAGGACACATCCTCGACTAGTTCAAGTAGAAATCTGGTGGAAGATCCTGTGGAGAATGACAATGAAAGCGAGAAAGAGGATTTTGTCTTTGCTGAGTATACACCACAAGATGATGAACAAATGTATGAAAGTGTGTCTTCAGAATCTTTGTCTTCAACCTCGACTCACCATCAAACATCTCAAACAGTTGAGAAGGATCTTATAATGGTTGCCTTGCTTCGTCTAGGTGCTTCTAAAGGAATACCGGTTGACTTTTTGCCGCAACTAGCACAAGGGCTATACAACTTTATTGAAAAATTTTATGATTGGGCTCGTGACATGGCATCTAAACTACCTTCCCTTTTTAACAAACCATTTGATAGTGTTTTTCAGAAACATTTGGCTTCACCCACTTCTGATCTTGGTGGTTCAAATACAATTCCCAATAGTTCTCGATATCTGAATGATTTTGAGGAGCTACAACCTCTTGGACATGGTGGTTTTGGCCATGTTATGCTGTGCAAAAATAAGCTTGATGGAAGGCAGTATGCTGTAAAGAAGATTCGCCTTAGGGACAAAACCATGCCTGAAAGAATATTAAGAGAAGTAGCCACACTTTCTCGTTTGCAGCATCAGCACATTGTTAGGTATTATCAGGCATGGTTTGAAACTGGAGTTGCAAACTCTGAAAATGATGTGGCTTGGAGTTCAAGGACTACACTAAGCACTTCTTTAAGTTTTACCTATAAAGCTGCAAGCTCCAATAATGCTCTTGGGCACGAAAATCAGCTTGAATCGACGTACCTTTATATACAAATGGAGTACTGTCCCAGGACTCTTCGCCAGGAGTTTGAATCGTATAATTTCGACAAAGAGATGGCATGGCATTTGTTTCGTCAAATAGTCGAAGGTTTGGCACATATACATGGACAAGGAATAATTCATCGGGATTTGACACCAAATAACATATTTTTTGATGCTTGCAATGATATTAAAATTGGTGATTTTGGTCTTGCCAAGTTCTTGAAGTTGGACAAGCTGGATCATGATCTTAGCCTTCCTGATCCGCCTGGAGTTTCTATAGATGGCACTGGACAAGTGGGAACTTATTTCTATACAGCTCCTGAAATTGAACAAGGATGGCCTAAGATTGATGAGAAGGCGGATATGTACAGCTTAGGTGTTGTTTTCTTTGAGCTTTGGCACCCATTTGGGACACAAATGGAGAGACATTTTGTGTTGTCTGATCTGAAACTGAAGGGAGAACTTCCTCCAGCATGGGTTGCTCAGTTTCCAGAACAGGAATCCTTGGTACGAAGGTTGATGTCTCCGAGTCCTTCTGATCGGCCTTCTGCCACTGAACTCCTACATAATGCCATTCCCCCGCGAATGGAATCTGAAGTATTGGATGGAAAGTGA 2181 0.4204 MGHSSKKKKRGGGGGRSKGRAPSKDHTSQSANDDTELSEEITALCAIFQEDCKVLLGSPPQISIKLRPYSKDMGYEDLDVSAILHVRCLPGYPFKCPKLQITPEDGLSESDADKLLSLLHDQATLNAREGRVMIFNLVEAAQEFLSGIEPIAKPIESKLLHSTEESNEELFPKDMVLSNQNIVYVHGLIDLFSDYGESWDWGIGMDVTAEKSSPLPPSKLEASKHDSETREKNSDSKEKLLIKQDILAKLDTVGEVSEDGNKDTSSTSSSRNLVEDPVENDNESEKEDFVFAEYTPQDDEQMYESVSSESLSSTSTHHQTSQTVEKDLIMVALLRLGASKGIPVDFLPQLAQGLYNFIEKFYDWARDMASKLPSLFNKPFDSVFQKHLASPTSDLGGSNTIPNSSRYLNDFEELQPLGHGGFGHVMLCKNKLDGRQYAVKKIRLRDKTMPERILREVATLSRLQHQHIVRYYQAWFETGVANSENDVAWSSRTTLSTSLSFTYKAASSNNALGHENQLESTYLYIQMEYCPRTLRQEFESYNFDKEMAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDACNDIKIGDFGLAKFLKLDKLDHDLSLPDPPGVSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGVVFFELWHPFGTQMERHFVLSDLKLKGELPPAWVAQFPEQESLVRRLMSPSPSDRPSATELLHNAIPPRMESEVLDGK 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30421g00005 726 ProSiteProfiles RWD domain profile. 39 148 IPR006575 GO:0005515
Stsc30421g00005 726 Pfam RWD domain 36 145 IPR006575 GO:0005515
Stsc30421g00005 726 MobiDBLite consensus disorder prediction 1 15 - -
Stsc30421g00005 726 SUPERFAMILY Protein kinase-like (PK-like) 399 711 IPR011009 -
Stsc30421g00005 726 MobiDBLite consensus disorder prediction 208 238 - -
Stsc30421g00005 726 FunFam eIF-2-alpha kinase GCN2 399 529 - -
Stsc30421g00005 726 Gene3D Phosphorylase Kinase; domain 1 399 529 - -
Stsc30421g00005 726 MobiDBLite consensus disorder prediction 253 288 - -
Stsc30421g00005 726 MobiDBLite consensus disorder prediction 259 275 - -
Stsc30421g00005 726 SUPERFAMILY UBC-like 35 145 IPR016135 -
Stsc30421g00005 726 SMART RWD2001b 39 148 IPR006575 GO:0005515
Stsc30421g00005 726 CDD STKc_EIF2AK4_GCN2_rpt2 404 711 - -
Stsc30421g00005 726 Gene3D Transferase(Phosphotransferase) domain 1 531 720 - -
Stsc30421g00005 726 Gene3D Ubiquitin Conjugating Enzyme 26 152 IPR016135 -
Stsc30421g00005 726 MobiDBLite consensus disorder prediction 19 33 - -
Stsc30421g00005 726 FunFam eIF-2-alpha kinase GCN2 27 154 - -
Stsc30421g00005 726 ProSitePatterns Tyrosine protein kinases specific active-site signature. 567 579 IPR008266 GO:0004672|GO:0006468
Stsc30421g00005 726 ProSiteProfiles Protein kinase domain profile. 411 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30421g00005 726 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 61 716 - -
Stsc30421g00005 726 FunFam eIF-2-alpha kinase GCN2 533 724 - -
Stsc30421g00005 726 Pfam Protein kinase domain 411 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30421g00005 726 MobiDBLite consensus disorder prediction 221 238 - -
Stsc30421g00005 726 ProSitePatterns Protein kinases ATP-binding region signature. 417 441 IPR017441 GO:0005524
Stsc30421g00005 726 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30421g00005 Stsc-Chr30421 23764 30960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30421g00005 405 718 Core Cell Cycle Gene Families AT1G02970 28.571 7.48e-20 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Stsc30421g00005 Pkinase 3.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30421g00005 K16196 - gmx:100797996 1004.59