Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30421g00001 ATGTCTTCCATTGCCATATCTTATGGCGAACAAGGTTCAGTCTTTTGTGGTTTGAAGCTAGATGGGTCCCATACTGTTACCTGTTATGGATCCAACACAGCCATAATCTATGGAACACCATCACATTTCTCATTCATTGGTCTAACTGCTGGTGATGGCTTTATATGTGGCCTTCTAATGGATTCAAGCCAACCATATTGTTGGGGAAGCAGTGGCTACATTGAAATGGGTGTGCCTCAACCAATGATCAAGGAAGCTGAGTACATAGACATCAGTGCTGGTGATTATCATGTGTGTGGATTGAGGAAGCCATTAACTGGAAGATTCAGGAACACTTCATTTGTTGATTGTTGGGGTTACAACATGACTAGGAACTATGTGTTTGATGGAATGTTTCAGTCAATTACAGCAGGTTCTGAATTCAACTGTGGCCTTTTCTCTCAGAATAGGACTGTGTTCTGTTGGGGTGATGAGACCAGTAGCAAGGTAATTACTTTGATTCCACATGACAAGAGATTCCAGAGAATCTCTGCTGGTGGATACCATGTTTGTGGAATCTTGGAAGGTGTGAAGAATTCAAGAGCTGTTTGTTGGGGAAGAAGCTTGGATATAGAAGAAGAAATCTCAGTGAAACAACATGTTGGTAGTTATGGTCATCAAGGGAATAATAATGTTGATCTGGCACCAAGTGATCCAATGCTATCTGTTGTTGGAGGAAAGTTTCATGCATGTGGAATCAAGAGCTATGATAGGGAAGTGATTTGTTGGGGATTCATCATCAAACCAAGCACACCACCACCAAGTGGAACCAAGGTGTTTGAGATTGCTGGTGGTGATTACTTCTCTTGTGGTGTTCTAGCTGAAAGATCTCTTATGCCTGTTTGCTGGGGTGTTGGTTTTCCAAAAACACTACCTTTGGCTGTTTCACCAGGAATGTGCAAGTCAAATCCATGTCCTCCTGGATTCTATGAGATTGATCTTCAAAAGGGTCTTTGCAAGTCAACAGATTCAAGAATTTGCATTCATTGCAGCACTGGTGATTGTCCTTCTGAGATGTATCAGAAGAGTGCATGTGGTTTGAATTCTGATAGAATATGTGAATATAATTGTTCTTCATGTTTTTCATCTAAGTGCTTATCAAATTGCTCATCTTCTAATGCTGAGAGGAAGAAAAATGATGATAAGTTTTGGGCTTTGCAGTTACCAGTTGTCATTGCTGAGATTGCTTTTGCAGTGTTCTTGGTTTGTATTGTGTCATTGACTGCAGTTTTGTATGTTAGATACAAGCTAAGAGATTGTGAGTGTTCTTCAGTGAGGTCAAAGGTGAAGAAACTCAATGGTGGATCTAACAGCAAGAATAGGACAAATTTGGAGGAGTTCAAGATTAGAAGGGCCCAAATGTTCACCTATGAGGAGCTTGAGACTGCAACTAATGGATTCAAAGAAGAATCCATAGTTGGGAAAGGAAGCTTCTCTTGTGTGTTCAAGGGTGTTCTGAAAGATGGCACTGTTGTTGCTGTTAAGAGGGCCATAGTTTCCCCAAACATGCAGAAGAATTCAAAGGAGTTTCACACAGAACTTGACTTGCTATCAAGGTTGAATCATGCACATTTGCTGAACCTATTAGGATATTGTGAAGAAGGAAATGAAAGGCTTCTTGTCTATGAATTCATGGCTCATGGTTCCTTGCATCAACACCTTCATGGTCCAAATAAGGTGTTAACGGAGCAGCTAGATTGGATAAGGAGGGTAACAATTGCAGTCCAAGCAGCAAGAGGAATTGAGTATTTGCATGGATATGCATGTCCACCAGTGATTCACAGAGACATAAAGTCATCAAACATCCTCATTGATGAAGAACACAATGCAAGAGTTGCTGATTTCGGCTTGTCATTGTTAGGCCCTGCAGACAGTGGTTCACCACTTGCTGAATTACCAGCTGGTACTCTTGGTTATCTTGATCCTGAGTACTACAGGCTTCACTACCTCACCACAAAATCTGATGTATATAGCTTTGGTGTTCTGTTATTGGAGATTCTAAGTGGTAGAAAAGCCATTGATATGCAATATGAAGAAGGGAACATTGTTGAATGGGCTGTGCCATTGATCAAGTCAGGTGACATAGCTGCAATACTAGACCCAGTTTTGAAACCTCCTTCTGATGTTGAAGCCTTGAAAAGGATTGCGAATGTGGCATGCAAATGTGTGAGGATGAGAGGGAAAGAAAGGCCTTCAATGGACAAAGTAACAACAGCATTGGAAAGAGGGTTAGCAATGCTAATGGGAAGTCCTTGCATTGAGCAACCAATTTTGCCAACTGAGGTTGTTTTGGGAAGCAATAGGTTGCACAAGAAATCATCACAAAGATCATCAAACAGGTCAGCTTCTGAGACCACTGAGGTAGCAGAAACTGAGGATCAAAGGATTGAGTTCAGGGCACCATCATGGATAACATTCCCAAGTGTTACATCTTCTCAGAGGAGGAAGTCTTCAGTGTCAGATGCTGATGTTGAAGGAGGGAAGAACAACAATAATAACAATGCAGAAGTGAATAAGAATTTGGGAAATGTTGGTGGTGATGGTTTGAAGAGTCTTGAGGAAGAGATTGGACCTGCTTCTCCTAGAGAGAGGTTGTTCTTGCAGCATAACTTCTAA 2655 0.4132 MSSIAISYGEQGSVFCGLKLDGSHTVTCYGSNTAIIYGTPSHFSFIGLTAGDGFICGLLMDSSQPYCWGSSGYIEMGVPQPMIKEAEYIDISAGDYHVCGLRKPLTGRFRNTSFVDCWGYNMTRNYVFDGMFQSITAGSEFNCGLFSQNRTVFCWGDETSSKVITLIPHDKRFQRISAGGYHVCGILEGVKNSRAVCWGRSLDIEEEISVKQHVGSYGHQGNNNVDLAPSDPMLSVVGGKFHACGIKSYDREVICWGFIIKPSTPPPSGTKVFEIAGGDYFSCGVLAERSLMPVCWGVGFPKTLPLAVSPGMCKSNPCPPGFYEIDLQKGLCKSTDSRICIHCSTGDCPSEMYQKSACGLNSDRICEYNCSSCFSSKCLSNCSSSNAERKKNDDKFWALQLPVVIAEIAFAVFLVCIVSLTAVLYVRYKLRDCECSSVRSKVKKLNGGSNSKNRTNLEEFKIRRAQMFTYEELETATNGFKEESIVGKGSFSCVFKGVLKDGTVVAVKRAIVSPNMQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGNERLLVYEFMAHGSLHQHLHGPNKVLTEQLDWIRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPADSGSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVEWAVPLIKSGDIAAILDPVLKPPSDVEALKRIANVACKCVRMRGKERPSMDKVTTALERGLAMLMGSPCIEQPILPTEVVLGSNRLHKKSSQRSSNRSASETTEVAETEDQRIEFRAPSWITFPSVTSSQRRKSSVSDADVEGGKNNNNNNAEVNKNLGNVGGDGLKSLEEEIGPASPRERLFLQHNF 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30421g00001 884 FunFam Receptor protein kinase CRINKLY4 558 760 - -
Stsc30421g00001 884 MobiDBLite consensus disorder prediction 822 853 - -
Stsc30421g00001 884 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 317 366 IPR001368 GO:0005515
Stsc30421g00001 884 FunFam serine/threonine-protein kinase-like protein CCR1 450 557 - -
Stsc30421g00001 884 SMART serkin_6 480 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30421g00001 884 FunFam Serine/threonine-protein kinase-like protein CR4 1 164 - -
Stsc30421g00001 884 MobiDBLite consensus disorder prediction 782 807 - -
Stsc30421g00001 884 SUPERFAMILY RCC1/BLIP-II 13 258 IPR009091 -
Stsc30421g00001 884 Gene3D - 43 310 IPR009091 -
Stsc30421g00001 884 Gene3D Transferase(Phosphotransferase) domain 1 558 760 - -
Stsc30421g00001 884 ProSiteProfiles Protein kinase domain profile. 480 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30421g00001 884 SUPERFAMILY Protein kinase-like (PK-like) 458 753 IPR011009 -
Stsc30421g00001 884 Gene3D Phosphorylase Kinase; domain 1 450 557 - -
Stsc30421g00001 884 ProSitePatterns Serine/Threonine protein kinases active-site signature. 605 617 IPR008271 GO:0004672|GO:0006468
Stsc30421g00001 884 MobiDBLite consensus disorder prediction 782 798 - -
Stsc30421g00001 884 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 1 884 - -
Stsc30421g00001 884 ProSitePatterns Protein kinases ATP-binding region signature. 486 508 IPR017441 GO:0005524
Stsc30421g00001 884 MobiDBLite consensus disorder prediction 822 861 - -
Stsc30421g00001 884 Pfam Protein kinase domain 480 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30421g00001 Stsc-Chr30421 3100 6067 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30421g00001 1 884 Receptor kinase-like Gene Family AT3G59420 68.309 0.0 1217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Stsc30421g00001 Pkinase 1.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30421g00001 - - gmx:100797455 1458.74