Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30418g00003 ATGGAAGCCAAGAACTCGGTTAGTGCGGATCGAGAGCAGATAATAGAGGAAGTTTCCGAGAAGATTGAGAAGGATTTAATTCTTCTTGGTGCTACTGCAGTTGAAGACAAACTTCAAAATGGGGTTCCTGAATGCATTGACAAGCTAGCACAGGCAGGCATTAAGCTATGGGTTTTAACTGGTGACAAAATGGAGACAGCAATCAACATCGGATTTGCTTGTAGTTTACTCAGACAAGGAATGAAGCAAATTATAATTAGCTCGGACACTCCGGAGGCCAAATCTTTGGAGAAAGCCGAGGACAAATCTGCTGCGGATGTGGCAATCAAGGAAATCGTACTTCGTCAATTAAGGGAAGGAGAGACATTACTTGCTTCATCTAATGAAAACTCTGAGGCCATTGCTCTGATCATCGACGGGAAGTCTCTCACACACGCTCTAGAAGATGATGTTATGGACTTGTTTCTGGAACTCGCCATCGGCTGTGCATCGGTTATATGCTGCCGGTCATCTCCTAAACAGAAAGCACTTGTAACTAGACTAGTTAAGACTAAAACTGGTAGTACAACTCTAGCGATCGGTGATGGGGCGAATGATGTTGGAATGCTCCAAGAAGCAGACATTGGGATTGGTATCAGTGGTGTTGAAGGAATGCAGGCAGTTATGTCAAGTGATATTGCAATTGCACAGTTCTGGTTTCTAGAGCGCTTACTTCTTGTGCACGGACATTGGTGTTACAGAAGAATCTCATCAATGATCTGCTACTTCTTTTACAAGAACATTGCCTTTGGCTTCACTCTTTTCTTCTACGAGATTTATGCCTCGTTCTCCGGCGAAGCTGCATACAATGATTGGTTCCTATCATTGTATAATGTATTCTTCACTTCTCTTCCTGTTATTGCCTTGGGAGTATTTGACCAAGATGTCTCTGCTAAATTATGCCTCAAGTTCCCATTGTTATATCAAGAAGGTGTACAAAACGTCCTATTTAGCTGGAAGCGAATCCTCGGGTGGGCATTCAACGGAGTCTTGAATGCTACACTGATATTCTTCTTCTGCATCAGGGCAATAGAGTATCAGGCATTCCGAAAAGGCGGCGAAGTCGCGGGGCTCGAGGTTCTCGGAGCCACCATGTACACTAGTGTAGTTTGGGTTGTTAATTGCCAAATGGCATTATCCATAAGTTACTTCACTTACATTCAACACATTTTCATTTGGGGTGGCATTCTTTTGTGGTATTTATTCCTCTTAGCATATGGTGCCATGGATCCTACTCTTTCAACCACTGCATATAAGGTCTTTGTTGAAGCTTGTGCTCCAGCACCATCTTACTGGCTCATAACTCTTCTTGTTCTTGCTACTTCACTCCTCCCCTATTTCATCTATGCGTCGATCCAGATGCGATTCTTCCCCATGTTCCATCAGATGATACAGTGGATAAGGAGTGATGGCCAAGCAACTGACCCCGAATATGTCAATGTTGTTCGTCAGAGATCGTTAAGACACACCACGGTCGGCTTCACTGCCCGATTCGAAGCTTCGAAACGGCTTCAGGTCTGA 1560 0.4404 MEAKNSVSADREQIIEEVSEKIEKDLILLGATAVEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMKQIIISSDTPEAKSLEKAEDKSAADVAIKEIVLRQLREGETLLASSNENSEAIALIIDGKSLTHALEDDVMDLFLELAIGCASVICCRSSPKQKALVTRLVKTKTGSTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFWFLERLLLVHGHWCYRRISSMICYFFYKNIAFGFTLFFYEIYASFSGEAAYNDWFLSLYNVFFTSLPVIALGVFDQDVSAKLCLKFPLLYQEGVQNVLFSWKRILGWAFNGVLNATLIFFFCIRAIEYQAFRKGGEVAGLEVLGATMYTSVVWVVNCQMALSISYFTYIQHIFIWGGILLWYLFLLAYGAMDPTLSTTAYKVFVEACAPAPSYWLITLLVLATSLLPYFIYASIQMRFFPMFHQMIQWIRSDGQATDPEYVNVVRQRSLRHTTVGFTARFEASKRLQV 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30418g00003 519 NCBIfam phospholipid-translocating P-type ATPase 2 478 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Stsc30418g00003 519 SUPERFAMILY Calcium ATPase, transmembrane domain M 173 471 IPR023298 -
Stsc30418g00003 519 FunFam Phospholipid-transporting ATPase 29 233 - -
Stsc30418g00003 519 Gene3D - 25 233 IPR023214 -
Stsc30418g00003 519 NCBIfam HAD-IC family P-type ATPase 159 276 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc30418g00003 519 SUPERFAMILY HAD-like 22 241 IPR036412 -
Stsc30418g00003 519 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 2 482 - -
Stsc30418g00003 519 Pfam Phospholipid-translocating P-type ATPase C-terminal 221 471 IPR032630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30418g00003 Stsc-Chr30418 20480 23501 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30418g00003 2 516 Primary Pumps ATPases AT3G25610 73.398 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30418g00003 K01530 - gmx:100797039 917.916