Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30418g00002 ATGGCGGAACCGGAGCTCAACCATGCGGAGGACCAATCAAACAACAACAAGAAGCTCCGCAAAAGGAAAAGGCCTCGCAAAGCTCAACAAGAAGCTCACCATTCCGCTGATGAAGAAGAGCAGCACAACAACGCTAACAACTCTGATGCAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGGGAAGAGAAAAATGTGACGCCTGCCGTTGAATCTGGAATCATGAGTTCCGATTCGTTCGATTCTCTTGAACTCTCTGATCCCACTTCCAAGGCTATTAAGGACATGGGCTTCAACCGAATGACTCAGATTCAAGCAAGAGCTATTCCTGAGCTTTTGCAAGGGAAAGATGTTCTTGGTGCTGCGAGGACTGGTTCGGGAAAGACCCTTGCATTTTTAATCCCAGCCGTGGAGTTGTTGTACAATGCCGAGTTTAAACCTCGTAATGGAACTGCAGTTATTGTCATATGTCCAACTAGAGAGCTTGCAATTCAGACACATGCGGTGGCAAAGGAATTGCTCAAGTATCATTCACAAAGTCTTGGATTAGTTATTGGGGGTTCAGGTAGAAAACGAGAGGCTGAACGGATTATTTCTGGGGTAAATCTATTGGTGGCAACACCCGGTCGCCTCCTCGATCACCTTCAAAATACAAAGGGATTCATATACAAAAACTTGAAGTGCCTCGTTATTGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATCATTAACATACTTCCAAAGACTAGGCAAACAGCTTTGTTTTCAGCTACACAAACAAAGAAGGTTAAGGATCTTGCCCGTTTGTCATTTCAGACAAGTCCTTCCAATATTGATGTAGATAATGGGAGAAGAAAGGTCACAAATGAAGGATTGCAGCAAGGCTATGTTGTTGTTCCATGTGCCAAGCGTTTTGTTGTTCTATATTCATTCTTGAGGAGGCATCAATCGAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCAGACCTTCTCAAGTGTGCTGGATTGGAATGCTTAAATATTCATGGAAAACAAAAGCAGCATGCCCGAACAACCACGTTCTTTAATTTTTGCAAAGCAGAAAAGGGGATATTGCTTTGTACTGATGTTGCTGCTCGGGGACTTGACATACCTGATGTGGATTGGATTGTGCAGTATGATCCACCTGATGAGCCAAAGGAATATATCCATAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGCCAAAGGAAATGCTTTGCTCTTTCTGATTGAGGAAGAATTGCAATTTCTTCGCTATCTTAAGGCAGCGAAGATCCCTATGAAAGAGTATGTATTTGAACACAAGAAGCTTGCAAATATACAGTCTCAACTGGAAAAGATGGTTGGTGGCATCTATCATTTGAATGTTATGGCTAAAGACGCTTACAGGTCATTTATATTAGCATATAATGCCCACACTATGAAGGATATATTCAATGTTCATCGCCTTGATCTACAGGCCGTTGCTGCTTCGTTCTGTTTTTCAAACCCACCGAAGGTGAATCTGAACTTAGACAGCAGTGCTTCAAAGCATAGGAGGAAAATACGCAAAGTGGAAGGAAGAATCAGCGATGGATCGACAAAATAA 1680 0.4232 MAEPELNHAEDQSNNNKKLRKRKRPRKAQQEAHHSADEEEQHNNANNSDAEEEEEEEEEEEEEEEEEEEEEREEKNVTPAVESGIMSSDSFDSLELSDPTSKAIKDMGFNRMTQIQARAIPELLQGKDVLGAARTGSGKTLAFLIPAVELLYNAEFKPRNGTAVIVICPTRELAIQTHAVAKELLKYHSQSLGLVIGGSGRKREAERIISGVNLLVATPGRLLDHLQNTKGFIYKNLKCLVIDEADRILEANFEEEMKQIINILPKTRQTALFSATQTKKVKDLARLSFQTSPSNIDVDNGRRKVTNEGLQQGYVVVPCAKRFVVLYSFLRRHQSKKVMVFFSSCNSVKFHADLLKCAGLECLNIHGKQKQHARTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGAKGNALLFLIEEELQFLRYLKAAKIPMKEYVFEHKKLANIQSQLEKMVGGIYHLNVMAKDAYRSFILAYNAHTMKDIFNVHRLDLQAVAASFCFSNPPKVNLNLDSSASKHRRKIRKVEGRISDGSTK 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30418g00002 559 Gene3D - 306 549 IPR027417 -
Stsc30418g00002 559 Gene3D - 31 298 IPR027417 -
Stsc30418g00002 559 Pfam Helicase conserved C-terminal domain 325 429 IPR001650 -
Stsc30418g00002 559 MobiDBLite consensus disorder prediction 1 17 - -
Stsc30418g00002 559 MobiDBLite consensus disorder prediction 1 96 - -
Stsc30418g00002 559 Coils Coil 36 78 - -
Stsc30418g00002 559 SMART helicmild6 349 430 IPR001650 -
Stsc30418g00002 559 CDD SF2_C_DEAD 310 440 - -
Stsc30418g00002 559 FunFam RNA helicase 306 536 - -
Stsc30418g00002 559 MobiDBLite consensus disorder prediction 30 48 - -
Stsc30418g00002 559 MobiDBLite consensus disorder prediction 81 96 - -
Stsc30418g00002 559 Pfam Domain of unknown function (DUF4217) 471 531 IPR025313 -
Stsc30418g00002 559 Pfam DEAD/DEAH box helicase 113 284 IPR011545 GO:0003676|GO:0005524
Stsc30418g00002 559 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 322 469 IPR001650 -
Stsc30418g00002 559 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 241 249 IPR000629 -
Stsc30418g00002 559 SMART DUF4217_3 470 533 IPR025313 -
Stsc30418g00002 559 CDD DEADc_DDX18 100 293 IPR044773 GO:0003724|GO:0005524
Stsc30418g00002 559 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 120 295 IPR014001 -
Stsc30418g00002 559 PANTHER RNA HELICASE 44 468 - -
Stsc30418g00002 559 SMART ultradead3 108 313 IPR014001 -
Stsc30418g00002 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 451 IPR027417 -
Stsc30418g00002 559 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 89 117 IPR014014 GO:0003724
Stsc30418g00002 559 MobiDBLite consensus disorder prediction 49 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30418g00002 Stsc-Chr30418 2547 6958 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30418g00002 89 444 Eukaryotic Initiation Factors Gene Family AT1G72730 31.579 9.18e-46 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30418g00002 K13179 - gmx:100793807 865.144