Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30417g00009 ATGGAGACAGCATTAAAATCATCTCAGTCTCTCATAAGACAACTTGTTAAATCACCAAGTCAAGCTTCCAAGTCAATACCATTACCAGGTCCAACTCCACACCTTTCTGGAACCAAGAGAAAGGAAACATTACCAGTAAGCACTGCTTCTAATCCTCCTCAACAAAATTGCCATCCGTTACATCCCTATACCAGTTACAAAGCGGAGGCAGATAATAATGTGTACTGCAAAATCTGCCAACTATCTTGCTCAAGTCCATTCAATCTCAAGCAGCATTTGATAGGTCACAAGCACAGGCAGAAGCTGCTAGAACTTGAATCTGGCGGAACAAGTGAGAAATGGTGTGATATGTGCAAAGTTTCATGTATGAATGAAGAGTTGCTGAAGCTTCACTTTCAAGGTAAAAAGCACAAGGCTCAATTACAGAAGTTGGAAGTTGATCAGCAAGGTGGTGAGCAGCTTCAAAATAAACAACAGAAATGGTGTGAATTATGCAAAATATGGTGCATTGATGAGTTTTCATTCAAGCAACATCTTCAAGGTAGAAAGCACATCTTGCAGCTGCATGCTATGGAGAAAGAAGGAAAAAAAAAGGACAAGGATGCATTGATATTATGA 618 0.3981 METALKSSQSLIRQLVKSPSQASKSIPLPGPTPHLSGTKRKETLPVSTASNPPQQNCHPLHPYTSYKAEADNNVYCKICQLSCSSPFNLKQHLIGHKHRQKLLELESGGTSEKWCDMCKVSCMNEELLKLHFQGKKHKAQLQKLEVDQQGGEQLQNKQQKWCELCKIWCIDEFSFKQHLQGRKHILQLHAMEKEGKKKDKDALIL 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30417g00009 205 SMART ZnF_U1_5 71 105 IPR003604 GO:0003676|GO:0008270
Stsc30417g00009 205 SMART ZnF_U1_5 110 144 IPR003604 GO:0003676|GO:0008270
Stsc30417g00009 205 SMART ZnF_U1_5 157 191 IPR003604 GO:0003676|GO:0008270
Stsc30417g00009 205 MobiDBLite consensus disorder prediction 1 58 - -
Stsc30417g00009 205 PANTHER ZINC FINGER RNA-BINDING PROTEIN 109 191 - -
Stsc30417g00009 205 SMART c2h2final6 160 184 IPR013087 -
Stsc30417g00009 205 SMART c2h2final6 74 96 IPR013087 -
Stsc30417g00009 205 SMART c2h2final6 113 137 IPR013087 -
Stsc30417g00009 205 Gene3D Classic Zinc Finger 64 108 - -
Stsc30417g00009 205 Gene3D Classic Zinc Finger 109 150 - -
Stsc30417g00009 205 Gene3D Classic Zinc Finger 151 199 - -
Stsc30417g00009 205 MobiDBLite consensus disorder prediction 1 27 - -
Stsc30417g00009 205 SUPERFAMILY beta-beta-alpha zinc fingers 112 146 IPR036236 -
Stsc30417g00009 205 SUPERFAMILY beta-beta-alpha zinc fingers 58 103 IPR036236 -
Stsc30417g00009 205 SUPERFAMILY beta-beta-alpha zinc fingers 152 191 IPR036236 -
Stsc30417g00009 205 MobiDBLite consensus disorder prediction 41 58 - -
Stsc30417g00009 205 Pfam Zinc-finger of C2H2 type 161 184 - -
Stsc30417g00009 205 Pfam Zinc-finger of C2H2 type 114 137 - -
Stsc30417g00009 205 Pfam Zinc-finger of C2H2 type 75 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30417g00009 Stsc-Chr30417 51288 52357 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30417g00009 74 192 C2H2 Transcription Factor Family AT5G61190 28.571 4.08e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc30417g00009 zf-met 1.2e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30417g00009 - - aip:107619886 269.24