Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30417g00008 ATGGATGGTAGGTGCAGGAAACAGAATAATATAATGGCAGTGGAAATTGCAATCCAGAGAGAGCTGGCACATAGGATGAAGGTGGCAGCACCACATTTGAGACCATCAAATTCTAATTCCACTAAGGAGGTTTTTCCTTTACAGGTTAAATCACCAAGTCAAGCTTCCAAGTCAATACCATTACCAGGTCCAACTCCACACCTTTCTGGAACCAAGAGAAAGGAAACATTACCAGTAAGCACTGCTTCTAATCCTCCTCAACAAAATTGCCATCCGTTACATCCCTATACCAGTTACAAAGCGGAGGCAGATAATAATGTGTACTGCAAAATCTGCCAACTATCTTGCTCAAGTCCATTCAATCTCAAGCAGCATTTGATAGGTCACAAGCACAGGCAGAAGCTGCTAGAACTTGAATCTGGCGGAACAAGTGAGAAATGGTGTGATATGTGCAAAGTTTCATGTATGAATGAAGAGTTGCTGAAGCTTCACTTTCAAGGTAAAAAGCACAAGGCTCAATTACAGAAGTTGGAAGTTGATCAGCAAGGTGGTGAGCAGCTTCAAAATAAACAACAGAAATGGTGTGAATTATGCAAAATATGGTGCATTGATGAGTTTTCATTCAAGCAACATCTTCAAGGTAGAAAGCACATCTTGCAGCTGCATGCTATGGAGAAAGAAGGAAAAAAAAAGGACAAGGATGCATTGATATTATGA 717 0.4059 MDGRCRKQNNIMAVEIAIQRELAHRMKVAAPHLRPSNSNSTKEVFPLQVKSPSQASKSIPLPGPTPHLSGTKRKETLPVSTASNPPQQNCHPLHPYTSYKAEADNNVYCKICQLSCSSPFNLKQHLIGHKHRQKLLELESGGTSEKWCDMCKVSCMNEELLKLHFQGKKHKAQLQKLEVDQQGGEQLQNKQQKWCELCKIWCIDEFSFKQHLQGRKHILQLHAMEKEGKKKDKDALIL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30417g00008 238 Gene3D Classic Zinc Finger 142 182 - -
Stsc30417g00008 238 Gene3D Classic Zinc Finger 97 141 - -
Stsc30417g00008 238 Gene3D Classic Zinc Finger 183 232 - -
Stsc30417g00008 238 SMART ZnF_U1_5 143 177 IPR003604 GO:0003676|GO:0008270
Stsc30417g00008 238 SMART ZnF_U1_5 104 138 IPR003604 GO:0003676|GO:0008270
Stsc30417g00008 238 SMART ZnF_U1_5 190 224 IPR003604 GO:0003676|GO:0008270
Stsc30417g00008 238 SMART c2h2final6 146 170 IPR013087 -
Stsc30417g00008 238 SMART c2h2final6 107 129 IPR013087 -
Stsc30417g00008 238 SMART c2h2final6 193 217 IPR013087 -
Stsc30417g00008 238 MobiDBLite consensus disorder prediction 74 91 - -
Stsc30417g00008 238 PANTHER OS06G0651300 PROTEIN-RELATED 145 228 - -
Stsc30417g00008 238 Pfam Zinc-finger of C2H2 type 194 217 - -
Stsc30417g00008 238 Pfam Zinc-finger of C2H2 type 108 131 - -
Stsc30417g00008 238 Pfam Zinc-finger of C2H2 type 147 170 - -
Stsc30417g00008 238 SUPERFAMILY beta-beta-alpha zinc fingers 92 136 IPR036236 -
Stsc30417g00008 238 SUPERFAMILY beta-beta-alpha zinc fingers 185 224 IPR036236 -
Stsc30417g00008 238 MobiDBLite consensus disorder prediction 33 60 - -
Stsc30417g00008 238 SUPERFAMILY beta-beta-alpha zinc fingers 145 179 IPR036236 -
Stsc30417g00008 238 MobiDBLite consensus disorder prediction 31 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30417g00008 Stsc-Chr30417 50544 52357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30417g00008 107 225 C2H2 Transcription Factor Family AT5G61190 28.571 8.67e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc30417g00008 zf-met 1.5e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30417g00008 - - aip:107619886 350.903