Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30417g00007 ATGTCACAGCAGGAAACAGATTCATGGGGCTTCCTCTTAGTCTGTTTCTTGGTCCTCTTCTTCCCAGGTAAATTGGTTGCTGGGAGTTCAATGGACACAGACAAGCAAATTATGCTGAAGCTGAAATCTTACATACAGAATCAAACTGTAGCAGACACAGGAAGGTTTATGAACTGGAACAAGTCAAGTCATTGTGAATGGTCAGGAATCTCTTGCAGCCTCATCAATGGTTCAGATTCATGGAGGGTTGTGAGCATAGACCTCTCTTCAAGTTCTTTATCTGGGGAGATGTTTAGCAACTTCTCTATGCTCTCTGAGCTCACACACCTTGATCTCTCTGGGAACTCATTCATTGGTGTGATTCCTGAGGACTTGAGGAAGTGCCAGAACCTTGTGTATCTCAACCTCTCCCACAATATTCTTGATGGGGAGCTGAATTTGACAGGCTTGACTAGGTTGCAGACGCTGGACTTGTCTACAAACAGGATTCGTGGGGAAATTGGGTCGAATTTCCCTGCCATTTGTGAGAGTTTGGTAACACTTAATGTCTCAGAGAATCACTTCACCGGTGGAATTGATGGATGCTTTGATCAATGCCTCAGGTTGCAGTACTTAGATTTGAGCACCAACAATCTTACTGGGACCATATGGACTGGGTTCACGAGGCTCAGACAGTTTTCGGTGTCAGAGAACTATCTCACTGGGATTGTTCCTTCTCATGCTTTTCCTGAAAATTGCAGCCTTGAAAAATTGGATCTTTCAGAGAATGGTTTTGTTGGTGAGCCCCCTAAGGAGATTGCTAACTGCAAAGAATTGGTGACTCTTGATCTTTCCAGCAACTATTTTAATGGGACAGTTCCTAAAGAATTCGGATCGATCTTAGGGCTAGAATCATTGATCTTGGGGAACAACACCTTTTCAAGAGATATTCCAGATTCCCTTTTGAACTTGTCCAAGTTGTTCATCTTGGATGTGAGCAACAACAGATTTGGTGGTGATGTACAAGTGATTTTTGGGAAATTCAAGCAAGTTAAGTTCCTTCTCCTTCAATCAAATGCCTATACTGGAGGATTGATGACATCAGGAATTTTCTCATTGACAAATCTTTCCCGATTAGACCTAAGCTTCAACAACTTTTCAGGTTCATTACCTCATGAAATCTCTCAACTTTCAGGTCTCACTTTCTTAACCTTAACCTACAACAAGTTCAGTGGACCAATTCCAGCTGAACTAGGAAATTTGACCAACATTCAAGCACTTGATCTTGCCTTCAACAATTTCAGTGGCTCGATCCCTCCAACCCTTGGAAAATTGAGTTCATTGCTATGGCTGATGCTTTCGGATAATTCGCTAACAGGTGAAATCCCACCAGAGTTGGGAAATTGCTCTAGCTTGTTATGGTTGAATCTTGCAAACAACAAGCTTTCTGGAAGGTTGCCCTCAGAATTGTCCAGAATTGGAACAAAGTCAATGGCCACATTTGAATTAAACAGAAAAACTATTGGCAAAATCGTTTCTGGCAATAGTGGATGCTCAGCAATGAGGAGATGGTTACCTGCTGATTACCCTCCATACAATTTTGTGTATAGCGTCCTAACAAGGAAGAATTGCAGAAGCCTTTGGTACAAACTTCTCAAAGGCTATGATATTTTCACCACATGGACATATGGTTCTTCCTCTAAATCATCACAGATAGGTGGTTACGTTCAATTAAGTGGGAACCAGCTCAGTGGTGAAGTACCTCCAGAAATTGGTAACATGATGAACTTCAGCATGTTGCATTTGGGGGACAACAAGTTCTCTGGGAAGTTCCCAGCAATGATTTCAAACATGGCACTTATAGTCTTGAACATGTCCAGAAACAATTTCTCAGGTGAAATTCCAGGCGAGATCAGCAACATGAAGTCTCTTCAGGATCTTGATTTGTCTTGGAACAATTTCTCAGGGCCAATTCCCTCAAGTTTGTTCAACATGGCTGAGCTTAGCGCGTTCAACATCTCATACAACCCCTTCATATCTGGTCAAGTGCCCACTAATGGATTTGTGACCTTTGACAAAAATTCATATTTGGGTGACCCCCTCTTGAGCCTCCCTAGTTACCTTAACAACGGCAATTCTTCACATAAACAAAAACACCTGACCAAGTCCACAAAGTTTTCTCCAATTTTCTTGTGTCTTTCTCTATCACTGGCCATGCTGGTCTTTGGACTCATCTGTCTTATAGTCTATTTCTTGGTGAAAACTCCATACGTAGAACAAGGATACCTTAAAAAGGTGGAGCATGAATCGACAAGTTCAGGTTCATCACCATGGTATTCGGATACTGTCAAAATATTCCACTTGAACAAGACAGTTTTCACACATGCTGATATCTTGTTAGCAACAGGGAGCTTCAAAGAGGATAGAGTCATAGGAAAAGGTGGATTTGGGACAGTGTACAAAGGGGTGTTTCCAGATGGTAGAGTAGTGGCAGTGAAGAAGCTTCAAAGGGAAGGAATTGAGGGTGAGAAAGAATTCAGAGCCGAAATGGAGGTTCTGAGTGGCCATGGTTTTGGTTGGCCTCATCCAAACCTTGTTACACTCTATGGCTGGTGCCTATATGGTTCACAGAAGATCCTTGTTTATGAGTACATAGGAGGAGGAAGCTTGGAGGATCTAGTCACTGACAAAGTGAGATTAACATCGAAGCGGCGCATAGAAGTGGCAATCGATGTGGCAAAAGCATTGGTCTATTTGCACCATGAATGCTACCCTTCAATTGTTCACAGAGATGTTAAGGCTAGCAATGTGTTACTAGACAATGATGGTAATGCCAAAGTCACAGACTTTGGACTTGCAAGATTTGTTGATTCTGAGGATTCTCATGTTAGCACAATGGTGGCTGGAACAGTAGGGTATGTTGCACCAGAATATGGACAAACAATGCAAGCAACAACAAAGGGTGATGTGTATAGTTATGGGGTTTTGACTATGGAGCTTGCAACTGGGAGAAGAGCAGTGGATGGTGGTGAAGAGTGCTTGGTTGAATGGGCTAGGAGAGTTATGGGGTTGAGCCATTCTGAGCCAGTTTTGGTCATGGAAGGTGAAGAGATGGCTGAGCTGTTCCAAGTTGGGGTTAAGTGCACAAATGAGTCACCACAGGCTAGGCCTAACATGAAGGAGGTTCTAGCCATGTTGGTCAAGATATACAACAATAACCCTAGTGGAGACTCAGGTTATGGCCACTACCTTGTTTAG 3237 0.4272 MSQQETDSWGFLLVCFLVLFFPGKLVAGSSMDTDKQIMLKLKSYIQNQTVADTGRFMNWNKSSHCEWSGISCSLINGSDSWRVVSIDLSSSSLSGEMFSNFSMLSELTHLDLSGNSFIGVIPEDLRKCQNLVYLNLSHNILDGELNLTGLTRLQTLDLSTNRIRGEIGSNFPAICESLVTLNVSENHFTGGIDGCFDQCLRLQYLDLSTNNLTGTIWTGFTRLRQFSVSENYLTGIVPSHAFPENCSLEKLDLSENGFVGEPPKEIANCKELVTLDLSSNYFNGTVPKEFGSILGLESLILGNNTFSRDIPDSLLNLSKLFILDVSNNRFGGDVQVIFGKFKQVKFLLLQSNAYTGGLMTSGIFSLTNLSRLDLSFNNFSGSLPHEISQLSGLTFLTLTYNKFSGPIPAELGNLTNIQALDLAFNNFSGSIPPTLGKLSSLLWLMLSDNSLTGEIPPELGNCSSLLWLNLANNKLSGRLPSELSRIGTKSMATFELNRKTIGKIVSGNSGCSAMRRWLPADYPPYNFVYSVLTRKNCRSLWYKLLKGYDIFTTWTYGSSSKSSQIGGYVQLSGNQLSGEVPPEIGNMMNFSMLHLGDNKFSGKFPAMISNMALIVLNMSRNNFSGEIPGEISNMKSLQDLDLSWNNFSGPIPSSLFNMAELSAFNISYNPFISGQVPTNGFVTFDKNSYLGDPLLSLPSYLNNGNSSHKQKHLTKSTKFSPIFLCLSLSLAMLVFGLICLIVYFLVKTPYVEQGYLKKVEHESTSSGSSPWYSDTVKIFHLNKTVFTHADILLATGSFKEDRVIGKGGFGTVYKGVFPDGRVVAVKKLQREGIEGEKEFRAEMEVLSGHGFGWPHPNLVTLYGWCLYGSQKILVYEYIGGGSLEDLVTDKVRLTSKRRIEVAIDVAKALVYLHHECYPSIVHRDVKASNVLLDNDGNAKVTDFGLARFVDSEDSHVSTMVAGTVGYVAPEYGQTMQATTKGDVYSYGVLTMELATGRRAVDGGEECLVEWARRVMGLSHSEPVLVMEGEEMAELFQVGVKCTNESPQARPNMKEVLAMLVKIYNNNPSGDSGYGHYLV 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30417g00007 1078 Gene3D Ribonuclease Inhibitor 567 713 IPR032675 -
Stsc30417g00007 1078 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 242 334 - -
Stsc30417g00007 1078 CDD STKc_IRAK 804 1062 - -
Stsc30417g00007 1078 ProSiteProfiles Leucine-rich repeat profile. 130 151 IPR001611 GO:0005515
Stsc30417g00007 1078 FunFam Putative LRR receptor-like serine/threonine-protein kinase 341 502 - -
Stsc30417g00007 1078 Gene3D Ribonuclease Inhibitor 335 509 IPR032675 -
Stsc30417g00007 1078 Gene3D Ribonuclease Inhibitor 244 334 IPR032675 -
Stsc30417g00007 1078 Gene3D Ribonuclease Inhibitor 147 243 IPR032675 -
Stsc30417g00007 1078 ProSiteProfiles Protein kinase domain profile. 798 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30417g00007 1078 SUPERFAMILY L domain-like 82 288 - -
Stsc30417g00007 1078 FunFam Putative LRR receptor-like serine/threonine-protein kinase 172 241 - -
Stsc30417g00007 1078 SUPERFAMILY L domain-like 219 675 - -
Stsc30417g00007 1078 Gene3D Transferase(Phosphotransferase) domain 1 879 1071 - -
Stsc30417g00007 1078 Gene3D Phosphorylase Kinase; domain 1 761 877 - -
Stsc30417g00007 1078 SUPERFAMILY Protein kinase-like (PK-like) 776 1060 IPR011009 -
Stsc30417g00007 1078 SMART serkin_6 798 1061 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30417g00007 1078 SMART LRR_typ_2 293 317 IPR003591 -
Stsc30417g00007 1078 SMART LRR_typ_2 634 658 IPR003591 -
Stsc30417g00007 1078 SMART LRR_typ_2 104 128 IPR003591 -
Stsc30417g00007 1078 SMART LRR_typ_2 438 462 IPR003591 -
Stsc30417g00007 1078 SMART LRR_typ_2 366 390 IPR003591 -
Stsc30417g00007 1078 SMART LRR_typ_2 150 170 IPR003591 -
Stsc30417g00007 1078 ProSitePatterns Protein kinases ATP-binding region signature. 804 827 IPR017441 GO:0005524
Stsc30417g00007 1078 Pfam Leucine rich repeat 152 212 IPR001611 GO:0005515
Stsc30417g00007 1078 Gene3D Ribonuclease Inhibitor 32 146 IPR032675 -
Stsc30417g00007 1078 Pfam Protein kinase domain 798 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30417g00007 1078 Pfam Leucine rich repeat N-terminal domain 32 73 IPR013210 -
Stsc30417g00007 1078 ProSitePatterns Serine/Threonine protein kinases active-site signature. 920 932 IPR008271 GO:0004672|GO:0006468
Stsc30417g00007 1078 FunFam Leucine-rich repeat receptor protein kinase MSP1 760 877 - -
Stsc30417g00007 1078 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 246 1061 - -
Stsc30417g00007 1078 FunFam Calmodulin-binding receptor kinase CaMRLK 567 678 - -
Stsc30417g00007 1078 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 878 1067 - -
Stsc30417g00007 1078 Pfam Leucine Rich Repeat 107 128 IPR001611 GO:0005515
Stsc30417g00007 1078 Pfam Leucine Rich Repeat 636 656 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30417g00007 Stsc-Chr30417 45548 49231 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30417g00007 13 1062 Receptor kinase-like Gene Family AT1G55610 32.967 1.36e-153 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Stsc30417g00007 Pkinase 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30417g00007 - - gmx:100781769 1492.63