Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30417g00003 ATGGGATGCGTCACCTCCAAGCACGCTGTCTCTGTCACGCCTGCCATCGACCACTCCGGTGCTTTACGCCCCAATGCCGCTCACTCCGCACGCAAAACTCCCCACTCCTCCGACACCACCAACAACACTGACTCGTCTCTTCTCACTCGGACTGAGTTGAGCGAGTCAGGGAGGGCCAGTTCTACTGCCGCTGAATCCCTCAGCTTTAGGCTCGGAAACCTCCACAAGTACGTCCAGGGAGACCATGTTGCCGCCGGTTGGCCTGCCTGGCTCAGCGCCGTCGCCGGCGAAGCCATCCACGGCTGGGTTCCCCTCCGCGCCGACGCATTCGAGAAACTTGACAAGATTGGGCAGGGTACTTATAGCAGCGTGTTCAGGGCGAGGGAGCTTGAGACCGGGAACATAGTGGCCTTAAAGAAGGTCCGCTTCGACAATTTCGAGCCGGAGAGTGTTCGCTTTATGGCTCGGGAGATAACCATTCTGAGAAGGCTTGATCATCCCAACATCATAAAGCTGCAGGGCTTGATCACTTCCAGGCTGTCCTGCAGCATATACCTCGTCTTTGAGTACATGGAGCACGACATCACGGGCCTCTTGTCCAGTCCTCATGTCAACTTTACCGAACCCCAGATTAAGTGCTATATGAAGCAGTTGTTGTCTGGTCTCGAGCATTGTCACTCCAGGGGTGTCATGCACCGGGATATCAAGGGATCCAATCTTCTGGTGAACAATGAAGGAGTTCTCAAGGTTGCTGATTTTGGATTGGCAAACTTCTCCACTTCTGGCTACAGGCATCCCCTCACCAGTCGTGTTGTCACTTTGTGGTATCGACCTCCGGAGCTTTTGCTGGGTTCAACGGATTATGGCCCTTCTGTTGATCTATGGAGTGTTGGCTGCGTTTTTGCAGAGCTACTTGTTGGGAAGCCTATACTTCAGGGGAGAACAGAGGTTGAACAATTGCACAAAATCTTCAAGCTTTGTGGCTCCCCACCTGATGAATACTGGAAAAAGACTAGACTTCCTCATGCAACTTTGTTTAAGCCACAGCAAGCATATGATAGTTGCCTCCGACAGTCCTTTAAAGATTTGCCTTCATCCAGTGTAAATCTGCTGCAAACTCTTCTTTCTGTTGAACCGTACAAGCGTGGGACTGCCACATCTGCTCTCTCATCAGAGTATTTCAAAACAAAACCTCATGCCTGTGAGCCATCAAGCTTGCCAACATACCCGCCCAGTAAGGAAATTGATGCGAAACACAGAGAGGAGTCAAGGAAAAAGATTACTGGACGAACTCGTGGAACTGATAAAAGAAAACCGTCAAGGAAGGCCCTTGGATTCAATAAACTAACTCCAGCGGAGGATTTGGCAAGTCAAACTCAAGCTTCCCAAAAAGTCAATGGTAGATCTGTTTCCATCCTTCAAGAACAGAAGGTTAACACAGGCGAGGAGGAACAAAATCCATCTAGTGGTAAACGTGAAGATGCTTCCCATACGAAGAATGCATCTCAAGAAGATATTCCCTTTTCCGGGCCATTACAAGTTTCATCATCAAGTGGCTTTGCATGGGCTAAAAGTCGTAAAGATGACACTTCAATTCGATCCCACTGTAGAACTATTTCGAGAGGACATATTTTTAACCAGTCAGAAACTTCAACACTAAAATCAAGGAATAATTTGGATAACAGAAACCAGGAAAGTAAGGAGTCCTCTGGGAGGCGCACCAACTCTAGGGGCAGCGACCTACTCGACTTTTCTAAGATTTCAATGCAGAATCCGTGGAATAAGTTTGATCGCCCAGATTCATTTGATGCTTCTGATGAGTACCACTCGCAAGAACTATCTATGGCACTTTATCGTAGAGAAGATTCAGCATCCAAGAGAAGTAACCTGAGTTTTCAAGATCAAGGAGAGAAGGTTGAATACTCCGGACCCCTTCTATCTCAAATGCACACAGTTGATGAGCTCTTAGAAAGACATGAGCGTCATATCCGACGCACTGTTCGGAAATCATGGTTTCAAAGAGTTAAGAAGCAGGGGAAGTAG 2043 0.4816 MGCVTSKHAVSVTPAIDHSGALRPNAAHSARKTPHSSDTTNNTDSSLLTRTELSESGRASSTAAESLSFRLGNLHKYVQGDHVAAGWPAWLSAVAGEAIHGWVPLRADAFEKLDKIGQGTYSSVFRARELETGNIVALKKVRFDNFEPESVRFMAREITILRRLDHPNIIKLQGLITSRLSCSIYLVFEYMEHDITGLLSSPHVNFTEPQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGVLKVADFGLANFSTSGYRHPLTSRVVTLWYRPPELLLGSTDYGPSVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTRLPHATLFKPQQAYDSCLRQSFKDLPSSSVNLLQTLLSVEPYKRGTATSALSSEYFKTKPHACEPSSLPTYPPSKEIDAKHREESRKKITGRTRGTDKRKPSRKALGFNKLTPAEDLASQTQASQKVNGRSVSILQEQKVNTGEEEQNPSSGKREDASHTKNASQEDIPFSGPLQVSSSSGFAWAKSRKDDTSIRSHCRTISRGHIFNQSETSTLKSRNNLDNRNQESKESSGRRTNSRGSDLLDFSKISMQNPWNKFDRPDSFDASDEYHSQELSMALYRREDSASKRSNLSFQDQGEKVEYSGPLLSQMHTVDELLERHERHIRRTVRKSWFQRVKKQGK 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30417g00003 680 MobiDBLite consensus disorder prediction 30 59 - -
Stsc30417g00003 680 MobiDBLite consensus disorder prediction 543 584 - -
Stsc30417g00003 680 MobiDBLite consensus disorder prediction 543 559 - -
Stsc30417g00003 680 FunFam probable serine/threonine-protein kinase At1g54610 193 433 - -
Stsc30417g00003 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Stsc30417g00003 680 MobiDBLite consensus disorder prediction 14 59 - -
Stsc30417g00003 680 Pfam Protein kinase domain 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30417g00003 680 MobiDBLite consensus disorder prediction 560 574 - -
Stsc30417g00003 680 MobiDBLite consensus disorder prediction 501 516 - -
Stsc30417g00003 680 FunFam probable serine/threonine-protein kinase At1g54610 97 192 - -
Stsc30417g00003 680 MobiDBLite consensus disorder prediction 486 500 - -
Stsc30417g00003 680 MobiDBLite consensus disorder prediction 413 429 - -
Stsc30417g00003 680 MobiDBLite consensus disorder prediction 452 485 - -
Stsc30417g00003 680 MobiDBLite consensus disorder prediction 398 516 - -
Stsc30417g00003 680 CDD STKc_CDK9_like 110 394 - -
Stsc30417g00003 680 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524
Stsc30417g00003 680 PANTHER CELL DIVISION PROTEIN KINASE 108 398 - -
Stsc30417g00003 680 Gene3D Phosphorylase Kinase; domain 1 97 192 - -
Stsc30417g00003 680 Gene3D Transferase(Phosphotransferase) domain 1 193 432 - -
Stsc30417g00003 680 SMART serkin_6 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30417g00003 680 ProSiteProfiles Protein kinase domain profile. 110 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30417g00003 680 SUPERFAMILY Protein kinase-like (PK-like) 103 399 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30417g00003 Stsc-Chr30417 18966 23866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30417g00003 102 426 Core Cell Cycle Gene Families AT5G10270 49.853 8.21e-112 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Stsc30417g00003 Pkinase 2.2e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30417g00003 - - gmx:100803328 1140.95