Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc30417g00002 | ATGGAGCTAATGAAAGTGCCAAGAGTGGAGGCCAAATTAAGAGTCTTCTCTTTCAAGATTCAGTTTGGGACTCAGATTGCAGACTTCAAGAGGAGTCTAAACACTGTGAACTCTGCCTGTGATGAGGTCCGAAATTCAGCTAAACTGAAGGAGATTATGAAGAAAATTCTTTATTTGGGCAACACACTGAATGAAGGAACGGCAAGGGGAGCTGCAGTTGGATTCAAGTTGGATAGTCTCTTAAAGCTTACTGACACTCGCGCTACTACTGGTAAAATGACACTGATGCATTATCTTTGCAAGGTCCTGGCTGAAAAGTCTCCAACACTCCTTGATTTTCACCTTGATCTAATTAGCTTGGAAGCATCCACGAAGATACAATTGAAGATGTTAGCAGAAGAAATGCAGGCAATCATCAAGGGACTAGAAAAGCTTAAACAGGAGCTGGCTGCATCTGAAACTGATGGCCCCGTGTCTGATGTTTTCCGTAAGGGTAGAAATGCAGATGCACTTGCACTCTATTTTGGTGAGGATCCAGCTCGCTGTCCATTTGAGCAAGTTACTGCAACTCTGTTGAATTTTACAAGACTGTTCCGAAAATCACACGACGAAAATATCAAACAAGCGGAGGCAGATAAGAAGAAGGCGGAGAAAGAGGCTGAAATGGAGAGGGAGAAGGCTAAAGCCGGGACACCAAGAAAGGGTGACCAGACACCAAGAAAGGGTGATTTAGAAGGCCAGACACCAAGAAAGTTTGATAGAGAGTTAGATGGCACGCAGACACCGAGAAAGATTGATAGAGAGTTAGATGGCACGCAGACACCGAGAAAGGGTGATAAAGAGAAGGAAGAAAGCTGA | 858 | 0.4417 | MELMKVPRVEAKLRVFSFKIQFGTQIADFKRSLNTVNSACDEVRNSAKLKEIMKKILYLGNTLNEGTARGAAVGFKLDSLLKLTDTRATTGKMTLMHYLCKVLAEKSPTLLDFHLDLISLEASTKIQLKMLAEEMQAIIKGLEKLKQELAASETDGPVSDVFRKGRNADALALYFGEDPARCPFEQVTATLLNFTRLFRKSHDENIKQAEADKKKAEKEAEMEREKAKAGTPRKGDQTPRKGDLEGQTPRKFDRELDGTQTPRKIDRELDGTQTPRKGDKEKEES | 285 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc30417g00002 | 285 | PANTHER | FORMIN-J | 1 | 226 | - | - | |
| Stsc30417g00002 | 285 | Pfam | Formin Homology 2 Domain | 1 | 164 | IPR015425 | - | |
| Stsc30417g00002 | 285 | Coils | Coil | 199 | 228 | - | - | |
| Stsc30417g00002 | 285 | Coils | Coil | 128 | 155 | - | - | |
| Stsc30417g00002 | 285 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 1 | 224 | IPR015425 | - | |
| Stsc30417g00002 | 285 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 2 | 226 | - | - | |
| Stsc30417g00002 | 285 | SMART | it6_source | 1 | 277 | IPR015425 | - | |
| Stsc30417g00002 | 285 | Gene3D | Formin, FH2 domain | 1 | 231 | IPR042201 | - | |
| Stsc30417g00002 | 285 | MobiDBLite | consensus disorder prediction | 208 | 285 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc30417g00002 | Stsc-Chr30417 | 7839 | 9572 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc30417g00002 | 1 | 227 | FH2 protein (formin) Gene Family | AT5G07740 | 74.000 | 7.40e-117 | 366 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc30417g00002 | - | - | ahf:112783432 | 457.218 |