Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30416g00002 ATGATGGCTTATCCGCATTACCGGCCACACTTGGGAGACACCACGTTCACTAAATTGTTTGTTGGAGGACTAGCTTGGGAGACTCCAACTGAAGAACTCCGCAAGTATTTCGAGCAGTTCGGCGACATTCTTGAAGCCGTTATCATCACTGATAAGAACACCGGAAAATCCAAAGGCTACGGTTTCGTAACGTTCCGCGATCAAGAATCAGCAAGGAGAGCATGTGCTGATCCCAACCCAGTCATTGATGGAAGAAGAGCTAATTGCAATATTGCTTCTCTTGGCAGGACTAGACCATCACCTCCCCGAGGAAGGAACTATATGGTTCAAGGAGGAGGAGGAGGAGGAGGACAGGGACAGGATGGTGGTGTGGCGGGGGCGTCGTACGGAGGGGTTCCGGGAGCAGGACCATCATCATTGGCAGGAGCAGCAGCAGTAATGTACCCACCGTATGGCTACCCAACCTACACTCCTGATTACGGATATCACCACCAAGCAGCATTGTACAGCCCACATCAGATTCAGCAAGCACAATACTATCATCATCATCAACAACAACAACTATATGGATCACCATCATCGCCAATGGGCTCACCATATTATTATGGTTACTCAATGCAAGCACCAAGAAGCGCATTACTTTCTTCACCACAGCATGCAAATCGCTTACCACCAGCACCTCCTGCTGCTGCTGGACCATCCTATGTATACTACCCTACCACACCCATGGAACCCTCCTCCTTCTCTGCTTATCATCATCATCATCATCATCCACTCCAACAACCAACAATAAGGCAACCCTTTTCATCTCCCACTGATCTACAAACTCAGCAGCAGCAACGTACCTCATCATCATCAACTGAAACAGCAGCAGCAGCTGGAGTAGTTATAACTTCATCAGAAAGTTCGAATACCCAGCAAGGGAAGAAGAACTAA 936 0.4829 MMAYPHYRPHLGDTTFTKLFVGGLAWETPTEELRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDQESARRACADPNPVIDGRRANCNIASLGRTRPSPPRGRNYMVQGGGGGGGQGQDGGVAGASYGGVPGAGPSSLAGAAAVMYPPYGYPTYTPDYGYHHQAALYSPHQIQQAQYYHHHQQQQLYGSPSSPMGSPYYYGYSMQAPRSALLSSPQHANRLPPAPPAAAGPSYVYYPTTPMEPSSFSAYHHHHHHPLQQPTIRQPFSSPTDLQTQQQQRTSSSSTETAAAAGVVITSSESSNTQQGKKN 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30416g00002 311 SMART rrm1_1 18 90 IPR000504 GO:0003723
Stsc30416g00002 311 MobiDBLite consensus disorder prediction 248 311 - -
Stsc30416g00002 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 76 IPR000504 GO:0003723
Stsc30416g00002 311 CDD RRM_RBM24_RBM38_like 17 92 - -
Stsc30416g00002 311 SUPERFAMILY RNA-binding domain, RBD 6 122 IPR035979 GO:0003676
Stsc30416g00002 311 Gene3D - 11 133 IPR012677 -
Stsc30416g00002 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 94 IPR000504 GO:0003723
Stsc30416g00002 311 FunFam RNA-binding protein 24-B isoform X1 4 114 - -
Stsc30416g00002 311 MobiDBLite consensus disorder prediction 262 311 - -
Stsc30416g00002 311 PANTHER BOULE-RELATED 11 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30416g00002 Stsc-Chr30416 22845 27898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30416g00002 13 93 C2H2 Transcription Factor Family AT2G19380 40.741 1.72e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30416g00002 K25006 - gmx:100788516 301.212