Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30415g00008 ATGGAAACCACTGAAAAGATCCCTCAGAAAACAACAACGAGTAGTAGTGGTGGGTTGAATCTAAAGGCCACTGAACTTAGACTTGGGTTGCCAGGTTCAGAATCACCAGAAAGAGATGAACATGGTGGTGGTGGTGTGAAGAAGGGTTCTGGTGGGGCCAAAAGGGGTTTCTGTTTCTCATCAGATGGTGGATCTGAAATGGGTATTGGTAAAGATGGTGCCTTGTTCTCTCCTCCTCCAAGGGAAAGAGAACAAGCATCTGTTATTAAAGAGAAGAAGCTTATTCATAATCAGAACCACATATCTTCTGCTTCTGCTGTAAAAGAACAGGTAGTGGGATGGCCACCAATCCGTTCATTCAGGAAGAACTCAATGGCTACAACTCAGAAGAATGATGATATTGATGCATCAGAAGCCAAATGTAGTAATTGCCTTTATGTGAAAGTGAGCATGGATGGTGCTCCATTCTTGAGGAAAGTTGATCTCAAAAACTTTGCTACTTATAAGGATCTCTCTTCAGCACTCAACAGCATGTTTACTTGCTTTACAATCAGTCAATGTGGAACTCATGGAGTTTCTGGTAGAGACAAGTTGAGTGAAAGTAAGTTGATGGATCTGCTTTATGGTTCAGAATATGTGCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAGATGTTCACTAATTCTTGCAAGAGATTGAGGATAATGAAGAGTTCTGAAGCTATAGGACTTGCACCAAGAGCCATGGAAAAGTGTAAAAGTCGCAACTAG 795 0.4189 METTEKIPQKTTTSSSGGLNLKATELRLGLPGSESPERDEHGGGGVKKGSGGAKRGFCFSSDGGSEMGIGKDGALFSPPPREREQASVIKEKKLIHNQNHISSASAVKEQVVGWPPIRSFRKNSMATTQKNDDIDASEAKCSNCLYVKVSMDGAPFLRKVDLKNFATYKDLSSALNSMFTCFTISQCGTHGVSGRDKLSESKLMDLLYGSEYVLTYEDKDGDWMLVGDVPWEMFTNSCKRLRIMKSSEAIGLAPRAMEKCKSRN 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30415g00008 264 MobiDBLite consensus disorder prediction 1 21 - -
Stsc30415g00008 264 SUPERFAMILY CAD & PB1 domains 140 245 - -
Stsc30415g00008 264 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 19 251 IPR003311 GO:0005634|GO:0006355
Stsc30415g00008 264 MobiDBLite consensus disorder prediction 1 54 - -
Stsc30415g00008 264 MobiDBLite consensus disorder prediction 61 80 - -
Stsc30415g00008 264 Pfam AUX/IAA family 24 255 IPR033389 -
Stsc30415g00008 264 ProSiteProfiles PB1 domain profile. 144 246 IPR000270 GO:0005515
Stsc30415g00008 264 Gene3D - 139 258 - -
Stsc30415g00008 264 FunFam Auxin-responsive protein 139 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30415g00008 Stsc-Chr30415 51369 54383 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30415g00008 148 254 B3 DNA Binding Superfamily AT4G23980 28.972 2.45e-07 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc30415g00008 AUX_IAA 1.1e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30415g00008 K14484 - gmx:100803754 338.961