Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30411g00010 ATGGTTTCTTTTGGAAGTTGTAGTATTTATAGAAGAACACAGAACCGTTTCTTTATGAGTTCTATCCTCAAATTTCGTAGCATATATGGTTCCTTTAAATGGTTTCATTCAAAACCTAATTGGGGTTCTGGTGCTTCTGTTGAAACTGCCAAATTGGAACCAAATAGGAATCACAATCGGGTAGGGGTTTTTTGGGACTTAGATAACAAGCCACCAAACCCAATTCCACCTTATGAAGTTGCCAATAAGCTTAGAATTGTTGCGTCTTCGTTTGGGGTTGTTAGGCATATGGTAGCTTATGCAAATAGCCACACTTTAAGCAGTGTCCCACACACTGTCCGGCAAAGGAGGAAAGAGAAGGAGCTGTATAATCATTTGGAGAGTAAGGGTGTCATCAAGCATAATGTACCTCATGTTTGTAGGGTTTGTGGGAGAAAGTTTTACACCAATGAGAAGCTTGTTAACCATTTCAAGCAGCTACATGAGAGCGAGCACATGAAAAGGGTGAACCAGATAGCGTCGGCTAGGGGGAGCCGGAGGGTGAAGTTGGTGGCAAAGTATTCGATGAAGATGGACAAGTATAAGAAGGCTGCAAGGGATATTCTTACTCCGAAAGTGGGGTATGGTTTGGCGGATGAGTTGAAACGTTCGGGGTTTTGGGTTCAGACTGTGTTGAATATGCCACAGGCTGCGGATCGGGCATTGGAAAGTCACATGGTGGATATGATGGATCATAGACGGGTTGAGTGCATAGTACTTGTGTCGGATGATTATGATTTTGCTAATGTATTAAATGAAGCGAAGCTACGATGTCTAAAGACCGTTGTCATTGGGGATACTAGTGATGGCGGTGTATTGAAGAGGATTGCTGATGCCGCCTTTTCTTGGGAGGAAATCCTAATGGGGAAAGCTAAAAAAGAGGCTGTATCAGTCGTCGAGAATTGGAAGGATCGTGATATTTTGAAAAGGTTAGAGTGGACATACAACCCAGAGGTGGATAAAAAGAAATTCGATCCGGCTGATATGGTTATTGAAGAATCAGAAGATGAGAATATTGAAGATATTTGTGATGATGTTCATGATGACTATAAGGATGACAGAGGTTCTTGGTGGGAGTTAGATTCAGATGAAAATGTTCCAAATGAAAGACAAGAAAAGCATACACCTTTTGTATGA 1176 0.4175 MVSFGSCSIYRRTQNRFFMSSILKFRSIYGSFKWFHSKPNWGSGASVETAKLEPNRNHNRVGVFWDLDNKPPNPIPPYEVANKLRIVASSFGVVRHMVAYANSHTLSSVPHTVRQRRKEKELYNHLESKGVIKHNVPHVCRVCGRKFYTNEKLVNHFKQLHESEHMKRVNQIASARGSRRVKLVAKYSMKMDKYKKAARDILTPKVGYGLADELKRSGFWVQTVLNMPQAADRALESHMVDMMDHRRVECIVLVSDDYDFANVLNEAKLRCLKTVVIGDTSDGGVLKRIADAAFSWEEILMGKAKKEAVSVVENWKDRDILKRLEWTYNPEVDKKKFDPADMVIEESEDENIEDICDDVHDDYKDDRGSWWELDSDENVPNERQEKHTPFV 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30411g00010 391 ProSitePatterns Zinc finger C2H2 type domain signature. 140 161 IPR013087 -
Stsc30411g00010 391 Gene3D - 52 300 - -
Stsc30411g00010 391 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 166 IPR013087 -
Stsc30411g00010 391 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 47 379 - -
Stsc30411g00010 391 Pfam NYN domain 210 291 IPR021139 GO:0004540
Stsc30411g00010 391 MobiDBLite consensus disorder prediction 370 391 - -
Stsc30411g00010 391 CDD PIN_LabA-like 148 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30411g00010 Stsc-Chr30411 49087 51664 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30411g00010 44 383 C2H2 Transcription Factor Family AT4G12240 55.143 3.32e-134 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc30411g00010 NYN 5.5e-07 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30411g00010 - - lja:Lj3g3v3326020.1 542.347