Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc30411g00003 ATGGGGAACTGTTGCTCTAGAGGCACTGAGGCCCCAGAGGAGAATTCTAATGCCAATGGCAATGGCAATGGCAATGGTGAGAATAGGGAAAATGGTAGGCAAGATCATCATGGCACAAAACAAGATGGTGGAGAGGCACAATCAAGGCCGGCCGCGCCTTCCAAGCCGACGAAACAAGGCCCGGTCGGTCCTGTCCTAGGAAGGCCAATGGAGGATGTTAAGGCCACATATAGCATGGGGAAAGAGCTAGGTAGAGGCCAATTTGGTGTCACGCATTTGTGCACTCATAAGGTCACAGGGAAACAATATGCATGTAAAACCATAGCCAAGAGGAAGCTCTCTAACAAGGAGGATATCGAAGATGTTCGCCGAGAGGTTCAGATCATGCATCATCTCACAGGACAGCCTAACATTGTTGAGCTCATGGGTGCCTATGAGGACAAACAATCTGTTCATCTTGTCATGGAGTTGTGTGCCGGAGGCGAGCTCTTCGACCGGATCATTGCTAAGGGGCATTATACAGAGCGCGCTGCGGCTTCCTTGTTGAGAACCATTGTCCAGATTGTCCATACTTGCCATTCCATGGGTGTTATTCATAGAGATCTTAAGCCTGAGAATTTCCTCTTGTTGAATAAGGATGAGAATGCCCCTCTTAAGGCCACAGATTTCGGTCTATCAGTTTTCTACAAACAAGGAGAGGTATTCAAAGACATTGTTGGAAGTGCTTATTACATTGCACCAGAGGTTTTGAAGAGAAAATATGGACCTGAAGTTGATATATGGAGTGTTGGTGTTATGTTATACATTCTTCTATGTGGTGTTCCTCCATTTTGGGCAGAATCTGAAAATGGGATATTCAATGCCATTCTAAGAGGGCACCTTGATTTTTCAAGTGATCCATGGCCATCAATTTCACCAGCAGCAAAAGATCTTGTAAGAAAAATGTTGACTTCTGATCCCAAGCAAAGGATCACAGCCTACCAAGTTCTCAATCATCCATGGATCAAGGAAGATGGAGAAGCACCAGATAAACCACTTGATAATGCGGTCCTCAATAGGCTCAAACAATTCAGAGCAATGAACCAGTTCAAGAAAGTTGCTCTAAGGGTTATTGCTGGATGCCTATCAGAGGAAGAAATCATGGGACTGAAGCAGATGTTCAAGGGGATGGACACTGACAACAGCGGAACCATCACGATCGAAGAACTCAAGCAAGGAATGGCGAAACAAGGGACTAAGCTGACAGAACAAGAACTTCAGCAATTAATGGAAGCTGCAGATGCAGATGGTAATGGACTAATAGATTATGATGAGTTCATCACAGCAACAATGCACATGAACAGAATGAACAGAGAAGAACACCTTTATACCGCATTCCAGTACTTCGACAAAGATAACAGCGGGTACATCACTGTTGAAGAACTAGAACAAGCTCTCAAAGAATTTAACATGCAAGACGGAAGGGACATCGCGGAAATCATCCAAGAAGTTGATGCTGATAATGACGGCCGCATTAACTACGACGAGTTTGCAGCAATGATGAGTAAGGGACACCCAGAAGCCATAATGACCAGGAAAAGGTGTTCAGTATCTTCTCTGTACTAG 1605 0.4474 MGNCCSRGTEAPEENSNANGNGNGNGENRENGRQDHHGTKQDGGEAQSRPAAPSKPTKQGPVGPVLGRPMEDVKATYSMGKELGRGQFGVTHLCTHKVTGKQYACKTIAKRKLSNKEDIEDVRREVQIMHHLTGQPNIVELMGAYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQIVHTCHSMGVIHRDLKPENFLLLNKDENAPLKATDFGLSVFYKQGEVFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLCGVPPFWAESENGIFNAILRGHLDFSSDPWPSISPAAKDLVRKMLTSDPKQRITAYQVLNHPWIKEDGEAPDKPLDNAVLNRLKQFRAMNQFKKVALRVIAGCLSEEEIMGLKQMFKGMDTDNSGTITIEELKQGMAKQGTKLTEQELQQLMEAADADGNGLIDYDEFITATMHMNRMNREEHLYTAFQYFDKDNSGYITVEELEQALKEFNMQDGRDIAEIIQEVDADNDGRINYDEFAAMMSKGHPEAIMTRKRCSVSSLY 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc30411g00003 534 CDD EFh 458 515 IPR002048 GO:0005509
Stsc30411g00003 534 FunFam calcium-dependent protein kinase 1 163 342 - -
Stsc30411g00003 534 Gene3D Phosphorylase Kinase; domain 1 79 162 - -
Stsc30411g00003 534 Pfam Protein kinase domain 77 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30411g00003 534 MobiDBLite consensus disorder prediction 1 28 - -
Stsc30411g00003 534 FunFam Calcium-dependent protein kinase 1 79 162 - -
Stsc30411g00003 534 ProSiteProfiles EF-hand calcium-binding domain profile. 450 485 IPR002048 GO:0005509
Stsc30411g00003 534 ProSitePatterns EF-hand calcium-binding domain. 427 439 IPR018247 -
Stsc30411g00003 534 ProSitePatterns EF-hand calcium-binding domain. 498 510 IPR018247 -
Stsc30411g00003 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Stsc30411g00003 534 ProSiteProfiles EF-hand calcium-binding domain profile. 378 413 IPR002048 GO:0005509
Stsc30411g00003 534 ProSiteProfiles EF-hand calcium-binding domain profile. 489 520 IPR002048 GO:0005509
Stsc30411g00003 534 ProSitePatterns EF-hand calcium-binding domain. 391 403 IPR018247 -
Stsc30411g00003 534 MobiDBLite consensus disorder prediction 1 69 - -
Stsc30411g00003 534 SUPERFAMILY Protein kinase-like (PK-like) 64 363 IPR011009 -
Stsc30411g00003 534 ProSitePatterns Protein kinases ATP-binding region signature. 83 110 IPR017441 GO:0005524
Stsc30411g00003 534 PANTHER SERINE/THREONINE-PROTEIN KINASE 72 510 - -
Stsc30411g00003 534 Pfam EF-hand domain pair 383 443 IPR002048 GO:0005509
Stsc30411g00003 534 Pfam EF-hand domain pair 452 515 IPR002048 GO:0005509
Stsc30411g00003 534 ProSitePatterns EF-hand calcium-binding domain. 463 475 IPR018247 -
Stsc30411g00003 534 CDD EFh 383 442 IPR002048 GO:0005509
Stsc30411g00003 534 SMART efh_1 418 446 IPR002048 GO:0005509
Stsc30411g00003 534 SMART efh_1 454 482 IPR002048 GO:0005509
Stsc30411g00003 534 SMART efh_1 489 517 IPR002048 GO:0005509
Stsc30411g00003 534 SMART efh_1 382 410 IPR002048 GO:0005509
Stsc30411g00003 534 SUPERFAMILY EF-hand 375 515 IPR011992 -
Stsc30411g00003 534 CDD STKc_CAMK 77 334 - -
Stsc30411g00003 534 ProSiteProfiles EF-hand calcium-binding domain profile. 414 449 IPR002048 GO:0005509
Stsc30411g00003 534 Gene3D Transferase(Phosphotransferase) domain 1 163 342 - -
Stsc30411g00003 534 Gene3D - 343 518 - -
Stsc30411g00003 534 MobiDBLite consensus disorder prediction 29 43 - -
Stsc30411g00003 534 SMART serkin_6 77 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc30411g00003 534 FunFam Calcium-dependent protein kinase 1 343 518 - -
Stsc30411g00003 534 ProSiteProfiles Protein kinase domain profile. 77 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc30411g00003 Stsc-Chr30411 4694 7220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc30411g00003 1 527 EF-hand Containing Proteins AT5G12180 81.664 0.0 904
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc30411g00003 Pkinase 2.7e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc30411g00003 K13412 - gmx:100820422 890.952